PXD004702

PXD004702 is an original dataset announced via ProteomeXchange.

Title	Genomic comparison of seed rhizobia
Description	The proteomic analysis was performed to look for proteins abundant in rhizobial seed strains and to compare with those from nodules. Despite that strain in comparison belong to the same species; we observed that abundant proteins were different. They were identified and analyzed by function and metabolic participation. In general, seed strains had abundant proteins from coenxyme and cofactor synthesis and nodule strains from other central processes.
HostingRepository	PRIDE
AnnounceDate	2018-10-29
AnnouncementXML	Submission_2018-10-29_07:33:09.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD004702
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Magdalena Hernandez Ortiz
SpeciesList	scientific name: Sinorhizobium americanum CCGM7; NCBI TaxID: 1408224; scientific name: Sinorhizobium americanum; NCBI TaxID: 194963; scientific name: Rhizobium sp. CIAT652; NCBI TaxID: 150847; scientific name: Rhizobium leguminosarum bv. phaseoli CCGM1; NCBI TaxID: 1408223;
ModificationList	S-carboxamidoethyl-L-cysteine; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	autoflex

Revision	Datetime	Status	ChangeLog Entry
0	2016-08-02 02:29:24	ID requested
⏵ 1	2018-10-29 07:33:10	announced

Peralta H, Aguilar A, D, í, az R, Mora Y, Mart, í, nez-Batallar G, Salazar E, Vargas-Lagunas C, Mart, í, nez E, Encarnaci, ó, n S, Girard L, Mora J, Genomic studies of nitrogen-fixing rhizobial strains from Phaseolus vulgaris seeds and nodules. BMC Genomics, 17(1):711(2016) [pubmed]

curator keyword: Biological

submitter keyword: Endophyte, Nitrogen Fixation, Legume, Seed, Adaptation.

Jaime Mora
contact affiliation	Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, Mexico.
contact email	jmora@ccg.unam.mx
lab head
Magdalena Hernandez Ortiz
contact affiliation	Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México
contact email	magda@ccg.unam.mx
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD004702

PRIDE project URI

• PRIDE
  1. PXD004702
     1. Label: PRIDE project
     2. Name: Genomic comparison of seed rhizobia