PXD004691

PXD004691 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Comparison of FFPE and fresh frozen prostate tissues using PCT SWATH
Description	We compared the proteomes of FFPE and fresh frozen tissues (both tumorous and non-tumorous) from 16 prostate cancer patients using pressure cycling technology and SWATH-MS.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:34:15.295.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Tiannan Guo
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	carbamoylated residue; monohydroxylated residue
Instrument	TripleTOF 5600

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2016-08-01 03:47:34	ID requested
1	2019-10-07 14:29:19	announced
⏵ 2	2024-10-22 04:34:18	announced	2024-10-22: Updated project metadata.

Publication List

10.1002/1878-0261.12570;
Zhu Y, Weiss T, Zhang Q, Sun R, Wang B, Yi X, Wu Z, Gao H, Cai X, Ruan G, Zhu T, Xu C, Lou S, Yu X, Gillet L, Blattmann P, Saba K, Fankhauser CD, Schmid MB, Rutishauser D, Ljubicic J, Christiansen A, Fritz C, Rupp NJ, Poyet C, Rushing E, Weller M, Roth P, Haralambieva E, Hofer S, Chen C, Jochum W, Gao X, Teng X, Chen L, Zhong Q, Wild PJ, Aebersold R, Guo T, High-throughput proteomic analysis of FFPE tissue samples facilitates tumor stratification. Mol Oncol, 13(11):2305-2328(2019) [pubmed]

10.1002/1878-0261.12570;

Zhu Y, Weiss T, Zhang Q, Sun R, Wang B, Yi X, Wu Z, Gao H, Cai X, Ruan G, Zhu T, Xu C, Lou S, Yu X, Gillet L, Blattmann P, Saba K, Fankhauser CD, Schmid MB, Rutishauser D, Ljubicic J, Christiansen A, Fritz C, Rupp NJ, Poyet C, Rushing E, Weller M, Roth P, Haralambieva E, Hofer S, Chen C, Jochum W, Gao X, Teng X, Chen L, Zhong Q, Wild PJ, Aebersold R, Guo T, High-throughput proteomic analysis of FFPE tissue samples facilitates tumor stratification. Mol Oncol, 13(11):2305-2328(2019) [pubmed]

Keyword List

curator keyword: Biological, Biomedical
submitter keyword: prostate cancer
PCT-SWATH
FFPE

curator keyword: Biological, Biomedical

submitter keyword: prostate cancer

PCT-SWATH

FFPE

Contact List

Ruedi Aebersold
contact affiliation	ETH Zurich
contact email	aebersold@imsb.biol.ethz.ch
lab head
Tiannan Guo
contact affiliation	Westlake University
contact email	tiannan.guo@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD004691
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD004691

PRIDE project URI

Repository Record List

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