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PXD004637

PXD004637 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleLabel-free analysis of CD8+ T cell subset proteomes supports a progressive differentiation model of virus-specific T cells in humans
DescriptionDifferent pathogens trigger naïve T cells to express distinct sets of effector proteins. To better understand the molecular mechanisms that drive this functional specification, we used high resolution, label-free mass spectrometry to measure proteomic differences between the seven largest circulating human CD8+ T cell subsets. Unsupervised hierarchical clustering of the proteomes placed naïve and CD45RA-expressing effector-type T cells at the extremes of the spectrum with central-memory and other effector-memory stages located in between. Prominent differences between the subsets included expression of various granzymes, signaling proteins and molecules involved in metabolic regulation. Remarkably, whereas most of the proteomic changes between the subsets were gradual, a small proportion of proteins were regulated only in discrete subsets. The data obtained from this proteome analysis correspond best to a progressive differentiation model in which specific stable traits are gradually acquired during pathogen-specific development.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_04:31:25.559.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterMaartje van den Biggelaar
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListacetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
InstrumentOrbitrap Fusion ETD
Dataset History
RevisionDatetimeStatusChangeLog Entry
02016-07-21 07:20:57ID requested
12017-05-02 01:18:52announced
22019-02-12 08:10:16announcedUpdated publication reference for PubMed record(s): 28467900.
32024-10-22 04:31:33announced2024-10-22: Updated project metadata.
Publication List
10.1016/j.celrep.2017.04.014;
van Aalderen MC, van den Biggelaar M, Remmerswaal EBM, van Alphen FPJ, Meijer AB, Ten Berge IJM, van Lier RAW, T Cell Subset Proteomes Supports a Progressive Differentiation Model of Human-Virus-Specific T Cells. Cell Rep, 19(5):1068-1079(2017) [pubmed]
Keyword List
curator keyword: Biological, Biomedical
submitter keyword: Human, CD8+ T cells
Contact List
Maartje van den Biggelaar
contact affiliationDepartment of Plasma Proteins, Sanquin Research, Amsterdam, the Netherlands
contact emailm.vandenbiggelaar@sanquin.nl
lab head
Maartje van den Biggelaar
contact affiliationSanquin Research
contact emailm.vandenbiggelaar@sanquin.nl
dataset submitter
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Dataset FTP location
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