PXD004438

PXD004438 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteomics of the phytopathogen Dickeya dadantii
Description	Here, we present the proteome characterization of Dickeya dadantii by shotgun proteomics (Data Dependent acquisition, DDA mode).
HostingRepository	PRIDE
AnnounceDate	2017-10-24
AnnouncementXML	Submission_2017-10-24_04:16:54.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Sophie Ayciriex
SpeciesList	scientific name: Dickeya dadantii subsp. dadantii; NCBI TaxID: 1233681;
ModificationList	2-pyrrolidone-5-carboxylic acid (Glu); monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2016-06-24 04:20:28	ID requested
1	2017-01-02 12:34:01	announced
⏵ 2	2017-10-24 04:16:55	announced	Updated project metadata.

Publication List

Rougemont B, Bontemps Gallo S, Ayciriex S, Carri, è, re R, Hondermarck H, Lacroix JM, Le Blanc JC, Lemoine J, Scout-MRM: Multiplexed Targeted Mass Spectrometry-Based Assay without Retention Time Scheduling Exemplified by Dickeya dadantii Proteomic Analysis during Plant Infection. Anal Chem, 89(3):1421-1426(2017) [pubmed]

Rougemont B, Bontemps Gallo S, Ayciriex S, Carri, è, re R, Hondermarck H, Lacroix JM, Le Blanc JC, Lemoine J, Scout-MRM: Multiplexed Targeted Mass Spectrometry-Based Assay without Retention Time Scheduling Exemplified by Dickeya dadantii Proteomic Analysis during Plant Infection. Anal Chem, 89(3):1421-1426(2017) [pubmed]

Keyword List

curator keyword: Biological
submitter keyword: MRM assay, LC-MSMS, bacteria

curator keyword: Biological

submitter keyword: MRM assay, LC-MSMS, bacteria

Contact List

Jérôme Lemoine
contact affiliation	Université de Lyon, Institut des Sciences Analytiques, UMR 5280, CNRS, Université Lyon 1, ENS Lyon - 5, rue de la Doua, F-69100 Villeurbanne, France
contact email	jerome.lemoine@univ-lyon1.fr
lab head
Sophie Ayciriex
contact affiliation	CNRS
contact email	sophie.ayciriex@univ-lyon1.fr
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/01/PXD004438
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/01/PXD004438

PRIDE project URI

Repository Record List

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