PXD004239

PXD004239 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Agave Americana Diel Proteome
Description	Agave americana 3 year-old clones were allowed to grow for one month under greenhouse 12h/12h light/dark conditions with regular irrigation. Three biological replicates of mature leaf were flash-frozen and ground under liquid nitrogen. Each cell pellet was resuspended in SDS buffer and sonicated. Proteins were extracted via TCA precipitation. Samples were denatured and reduced followed by enzymatic digestion using trypsin. Samples were analyzed via 2D (SCX-RP) nano-LC-MS/MS on an Orbitrap-Velos-Pro. MS/MS spectra were searched and filtered with MyriMatch and IDPicker. Note, the Peak List and Result files do not have the same sample description as found in the published manuscript. Please use the key provided in the Supplemental Files.
HostingRepository	MassIVE
AnnounceDate	2016-11-01
AnnouncementXML	Submission_2016-11-01_08:42:27.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Paul Abraham
SpeciesList	scientific name: Agave americana; NCBI TaxID: 39510;
ModificationList	unknown modification: Carbamidomethyl Cysteine as static modification; unknown modification: Oxidation Methione and Carbamylation N-terminus as dynamic modification
Instrument	LTQ Orbitrap

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2016-05-27 07:13:32	ID requested
⏵ 1	2016-11-01 08:42:27	announced

Publication List

Dataset with its publication pending

Dataset with its publication pending

Keyword List

submitter keyword: CAM, proteomics, Agave, diel cycle

submitter keyword: CAM, proteomics, Agave, diel cycle

Contact List

Xiaohan Yang
lab head
Paul Abraham
contact affiliation	Oak Ridge Ridge National Laboratory
contact email	abrahampe@ornl.gov
dataset submitter

Full Dataset Link List

MassIVE dataset URI
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MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000079780