PXD004238

PXD004238 is an original dataset announced via ProteomeXchange.

Title	Proteomic characterization of Rathayibacter toxicus FH 79 using LC MS/MS
Description	Rathayibacter toxicus is a gram-positive bacterium that is the causative agent of annual ryegrass toxicity, a disease that causes devastating losses in the Australian livestock industry. This bacterium is poorly characterized, making it difficult to accurately detect in feed samples. Using 1-D gels and mass spectrometry, we analyzed the protein expression of R. toxicus under stationary growth phase conditions to obtain a more complete understanding of the mechanisms of this organism. A total of 333 unique proteins were identified. The data obtained in this analysis is an essential first step toward developing an antibody-based diagnostic assay.
HostingRepository	PRIDE
AnnounceDate	2018-01-15
AnnouncementXML	Submission_2018-01-15_00:33:52.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD004238
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Michael McMahon
SpeciesList	scientific name: Rathayibacter toxicus; NCBI TaxID: 145458;
ModificationList	Glu->pyro-Glu; Oxidation; Carbamidomethyl; Gln->pyro-Glu
Instrument	LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2016-05-27 02:54:34	ID requested
⏵ 1	2018-01-15 00:33:53	announced

Fennessey CM, McMahon MB, Sechler AJ, Kaiser J, Garrett WM, Tancos MA, Luster DG, Rogers EE, Schneider WL, Partial Proteome of the Corynetoxin-Producing Gram-Positive Bacterium, Rathayibacter toxicus. Proteomics, 18(3-4):(2018) [pubmed]

curator keyword: Biological

submitter keyword: gram-positive bacteria, LC-MSMS

Michael Boyd McMahon
contact affiliation	USDA- ARS- NAA Foreign Disease Weed Science Research Unit 1301 Ditto Ave. Fort Detrick, MD 21702
contact email	michael.mcmahon@ars.usda.gov
lab head
Michael McMahon
contact affiliation	USDA ARS FDWSRU
contact email	michael.mcmahon@ars.usda.gov
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/01/PXD004238

PRIDE project URI

• PRIDE
  1. PXD004238
     1. Label: PRIDE project
     2. Name: Proteomic characterization of Rathayibacter toxicus FH 79 using LC MS/MS