PXD004209

PXD004209 is an original dataset announced via ProteomeXchange.

Title	A detailed proteomic analysis of plasma membrane from zebrafish brain
Description	The brain plasma membrane proteome represents the major subsets of signaling proteins and promising drug targets though often understudied due to traditional experimental difficulties. Here we report a comprehensive dataset of the proteins identified in the highly enriched plasma membrane of zebrafish brain by applying multidimensional liquid chromatography coupled with tandem-mass spectrometry (MS/MS). A total number of 108767 peptide groups were identified resulting in 9201 proteins. These included brain receptors, transporters and channels that are important elements linked to brain functions, diseases and drug discovery.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:29:53.035.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Roman Smidak
SpeciesList	scientific name: Danio rerio (Zebrafish) (Brachydanio rerio); NCBI TaxID: 7955;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2016-05-23 07:59:08	ID requested
1	2018-07-05 06:47:37	announced
⏵ 2	2024-10-22 04:30:01	announced	2024-10-22: Updated project metadata.

10.1002/prca.201600081;

Smidak R, Aradska J, Kirchberger S, Distel M, Sialana FJ, Wackerlig J, Mechtcheriakova D, Lubec G, A detailed proteomic profiling of plasma membrane from zebrafish brain. Proteomics Clin Appl, 10(12):1264-1268(2016) [pubmed]

curator keyword: Biological

submitter keyword: zebrafish brain, membrane proteome

Prof. Gert Lubec
contact affiliation	Medical University of Vienna, Vienna, Austria
contact email	lubec@gmx.at
lab head
Roman Smidak
contact affiliation	Medical University of Vienna
contact email	roman.smidak@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/07/PXD004209

PRIDE project URI

• PRIDE
  1. PXD004209
     1. Label: PRIDE project
     2. Name: A detailed proteomic analysis of plasma membrane from zebrafish brain