PXD004209 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | A detailed proteomic analysis of plasma membrane from zebrafish brain |
Description | The brain plasma membrane proteome represents the major subsets of signaling proteins and promising drug targets though often understudied due to traditional experimental difficulties. Here we report a comprehensive dataset of the proteins identified in the highly enriched plasma membrane of zebrafish brain by applying multidimensional liquid chromatography coupled with tandem-mass spectrometry (MS/MS). A total number of 108767 peptide groups were identified resulting in 9201 proteins. These included brain receptors, transporters and channels that are important elements linked to brain functions, diseases and drug discovery. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:29:53.035.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Roman Smidak |
SpeciesList | scientific name: Danio rerio (Zebrafish) (Brachydanio rerio); NCBI TaxID: 7955; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2016-05-23 07:59:08 | ID requested | |
1 | 2018-07-05 06:47:37 | announced | |
⏵ 2 | 2024-10-22 04:30:01 | announced | 2024-10-22: Updated project metadata. |
Publication List
10.1002/prca.201600081; |
Smidak R, Aradska J, Kirchberger S, Distel M, Sialana FJ, Wackerlig J, Mechtcheriakova D, Lubec G, A detailed proteomic profiling of plasma membrane from zebrafish brain. Proteomics Clin Appl, 10(12):1264-1268(2016) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: zebrafish brain, membrane proteome |
Contact List
Prof. Gert Lubec |
contact affiliation | Medical University of Vienna, Vienna, Austria |
contact email | lubec@gmx.at |
lab head | |
Roman Smidak |
contact affiliation | Medical University of Vienna |
contact email | roman.smidak@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/07/PXD004209 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD004209
- Label: PRIDE project
- Name: A detailed proteomic analysis of plasma membrane from zebrafish brain