PXD004149

PXD004149 is an original dataset announced via ProteomeXchange.

Title	Personalized proteome profiles of healthy and tumor human colon organoids reveal both individual diversity and basic features of colorectal cancer.
Description	We performed quantitative mass spectrometry based proteomic analysis and comparative transcriptomics analysis of 7 individual patient-derived human colorectal tumor and healthy organoids, the latter acquired from adjacent healthy tissue.
HostingRepository	PRIDE
AnnounceDate	2017-01-16
AnnouncementXML	Submission_2017-06-13_07:56:45.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Alba Cristobal
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	4x(2)H labeled dimethylated residue; monohydroxylated residue; dimethylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive; LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2016-05-16 01:12:26	ID requested
1	2017-01-16 03:37:42	announced
⏵ 2	2017-06-13 07:56:46	announced	Updated publication reference for PubMed record(s): 28052255.

Cristobal A, van den Toorn HWP, van de Wetering M, Clevers H, Heck AJR, Mohammed S, Personalized Proteome Profiles of Healthy and Tumor Human Colon Organoids Reveal Both Individual Diversity and Basic Features of Colorectal Cancer. Cell Rep, 18(1):263-274(2017) [pubmed]

curator keyword: Biomedical

submitter keyword: organoids, proteomics, colon cancer

Albert J. R. Heck
contact affiliation	Biomolecular Mass Spectrometry and Proteomics Utrecht University
contact email	a.j.r.heck@uu.nl
lab head
Alba Cristobal
contact affiliation	Utrecht University
contact email	a.cristobalgonzalezdedurana@uu.nl
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/01/PXD004149

PRIDE project URI

• PRIDE
  1. PXD004149
     1. Label: PRIDE project
     2. Name: Personalized proteome profiles of healthy and tumor human colon organoids reveal both individual diversity and basic features of colorectal cancer.