PXD004090

PXD004090 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Quantitative proteome of Shewanella oneidensis MR-1
Description	We investigated the anode-specific responses of Shewanella oneidensis MR-1, an exoelectroactive ammaproteobacterium, using for the first time iTRAQ and 2D-LC MS/MS driven membrane proteomics to compare protein abundances in S. oneidensis when generating power in MFCs, and growing in a continuous culture.
HostingRepository	PRIDE
AnnounceDate	2016-12-08
AnnouncementXML	Submission_2016-12-08_03:03:23.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Trong Khoa Pham
SpeciesList	scientific name: Shewanella oneidensis (strain MR-1); NCBI TaxID: 211586;
ModificationList	methylthiolated residue; monohydroxylated residue
Instrument	QSTAR

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2016-05-03 01:57:55	ID requested
⏵ 1	2016-12-08 03:03:24	announced

Publication List

Fowler GJ, Pereira-Medrano AG, Jaffe S, Pasternak G, Pham TK, Ledezma P, Hall ST, Ieropoulos IA, Wright PC, An iTRAQ characterisation of the role of TolC during electron transfer from Shewanella oneidensis MR-1. Proteomics, 16(21):2764-2775(2016) [pubmed]

Fowler GJ, Pereira-Medrano AG, Jaffe S, Pasternak G, Pham TK, Ledezma P, Hall ST, Ieropoulos IA, Wright PC, An iTRAQ characterisation of the role of TolC during electron transfer from Shewanella oneidensis MR-1. Proteomics, 16(21):2764-2775(2016) [pubmed]

Keyword List

curator keyword: Biological
submitter keyword: iTRAQ, membrane proteins, Microbial fuel cell (MFC) bioﬁlms, Shewanella oneidensis MR-1

curator keyword: Biological

submitter keyword: iTRAQ, membrane proteins, Microbial fuel cell (MFC) bioﬁlms, Shewanella oneidensis MR-1

Contact List

Trong Khoa Pham
contact affiliation	Department of Chemical and Biological Engineering, The University of Sheffield, Mappin Street, Sheffield, S1 3JD, United Kingdom
contact email	khoa.pham@sheffield.ac.uk
lab head
Trong Khoa Pham
contact affiliation	Department of Chemical and Biological Engineering
contact email	khoa.pham@sheffield.ac.uk
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/12/PXD004090
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/12/PXD004090

PRIDE project URI

Repository Record List

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