PXD003953

PXD003953 is an original dataset announced via ProteomeXchange.

Title	In-depth Analysis of Protein Inference Algorithms using a Workflow Framework and Well-Defined Metrics - iPRG 2008 Swiss-Prot analysis
Description	This dataset is no actual new study but the results of the benchmark of the iPRG2008 benchmark dataset used in the manuscript "In-depth Analysis of Protein Inference Algorithms using a Workflow Framework and Well-Defined Metrics".
HostingRepository	PRIDE
AnnounceDate	2016-08-10
AnnouncementXML	Submission_2016-08-10_02:12:38.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Julian Uszkoreit
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	iTRAQ4plex-116 reporter+balance reagent acylated residue; methylthiolated residue; monohydroxylated residue
Instrument	Q TRAP

Revision	Datetime	Status	ChangeLog Entry
0	2016-04-13 02:55:57	ID requested
⏵ 1	2016-08-10 02:12:39	announced

Audain E, Uszkoreit J, Sachsenberg T, Pfeuffer J, Liang X, Hermjakob H, Sanchez A, Eisenacher M, Reinert K, Tabb DL, Kohlbacher O, Perez-Riverol Y, In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics. J Proteomics, 150():170-182(2017) [pubmed]

curator keyword: Technical

submitter keyword: reanalysis, mouse

Katrin Marcus
contact affiliation	uhr-Universität Bochum, Medizinisches Proteom-Center
contact email	katrin.marcus@rub.de
lab head
Julian Uszkoreit
contact affiliation	Ruhr-Universität Bochum, Medizinisches Proteom-Center, Medical Bioinformatics, Algorithmic Proteomics
contact email	julian.uszkoreit@rub.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/08/PXD003953

PRIDE project URI

• PRIDE
  1. PXD003953
     1. Label: PRIDE project
     2. Name: In-depth Analysis of Protein Inference Algorithms using a Workflow Framework and Well-Defined Metrics - iPRG 2008 Swiss-Prot analysis