PXD003903

PXD003903 is an original dataset announced via ProteomeXchange.

Title	HipSci project pilot submission for 18 IPS cell lines
Description	The Human Induced Pluripotent Stem Cells Initiative (HipSci) is generating a large, high-quality reference panel of human IPSC lines. This is a pilot submission of mass-spectrometry analyses from 18 induced pluripotent stem cell lines generated by the HipSci project. This submission includes also data for two embryonic stem cell lines, and one reference sample comprising a mixture of 42 IPSC lines. Associated BioSamples accessions: SAMEA2397999, SAMEA2398167, SAMEA2398916, SAMEA2397948 , SAMEA2399112,SAMEA2399257, SAMEA2398553, SAMEA2398821, SAMEA2398316, SAMEA2469778, SAMEA2399037, SAMEA2398656, SAMEA2398428, SAMEA2469777, SAMEA2397959, SAMEA2398442, SAMEA2398024, SAMEA2398450, SAMEA3402864, SAMEA3110364
HostingRepository	PRIDE
AnnounceDate	2017-05-12
AnnouncementXML	Submission_2017-05-12_00:43:57.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	HipSci Project
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	S-carboxamidomethyl-L-cysteine; methylated lysine; phosphorylated residue; Acetyl; N-acylated residue; oxidized residue; deamidated residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2016-04-04 09:52:45	ID requested
1	2016-06-06 16:22:18	announced
⏵ 2	2017-05-12 00:44:01	announced	Updated publication reference for PubMed record(s): 28489815.

Kilpinen H, Goncalves A, Leha A, Afzal V, Alasoo K, Ashford S, Bala S, Bensaddek D, Casale FP, Culley OJ, Danecek P, Faulconbridge A, Harrison PW, Kathuria A, McCarthy D, McCarthy SA, Meleckyte R, Memari Y, Moens N, Soares F, Mann A, Streeter I, Agu CA, Alderton A, Nelson R, Harper S, Patel M, White A, Patel SR, Clarke L, Halai R, Kirton CM, Kolb-Kokocinski A, Beales P, Birney E, Danovi D, Lamond AI, Ouwehand WH, Vallier L, Watt FM, Durbin R, Stegle O, Gaffney DJ, Common genetic variation drives molecular heterogeneity in human iPSCs. Nature, 546(7658):370-375(2017) [pubmed]

curator keyword: Biological, Biomedical

submitter keyword: Human, IPS cells, pluripotent, HPLC fractionation (SAX), label free quantitative proteomics

Angus Lamond
contact affiliation	College of Life Sciences, University of Dundee
contact email	a.i.lamond@dundee.ac.uk
lab head
HipSci Project
contact affiliation	Human Induced Pluripotent Stem Cells Initiative Human Induced Pluripotent Stem Cells Initiative Human Induced Pluripotent Stem Cells Initiative
contact email	hipsci@ebi.ac.uk
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/06/PXD003903

PRIDE project URI

• PRIDE
  1. PXD003903
     1. Label: PRIDE project
     2. Name: HipSci project pilot submission for 18 IPS cell lines