PXD003900 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | The exposed proteomes of Brachyspira hyodysenteriae and B. pilosicoli |
Description | Applying a shotgun proteomics approach, we built a unique database of Brachyspira hyodysenteriae and B. pilosicoli peptides and proteins. A total of 148 LC-MS/MS runs were conducted on an Orbitrap instrument, and more than 29000 different peptides in cell supernatants and partially digested cell suspensions of 3 strains of B. hyodysenteriae and 2 strains of B. pilosicoli were identified. Overall, 16970 and 15493 peptide sequences, which pointed to 1625 and 1338 different protein accessions, were identified in B. hyodysenteriae and B. pilosicoli, respectively. The large-scale characterization of peptides and proteins in the extracellular medium as well as of the exposed proteins on the bacterial surface in these species provides a unique collection of interrelated data on the molecules involved in the interaction of these bacteria with their environment. |
HostingRepository | PRIDE |
AnnounceDate | 2023-11-14 |
AnnouncementXML | Submission_2023-11-14_08:49:00.277.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Montserrat Carrascal |
SpeciesList | scientific name: Brachyspiraceae; NCBI TaxID: 143786; |
ModificationList | 2-pyrrolidone-5-carboxylic acid (Glu); monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2016-04-04 04:14:57 | ID requested | |
1 | 2016-07-05 07:21:02 | announced | |
⏵ 2 | 2023-11-14 08:49:00 | announced | 2023-11-14: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
curator keyword: Biological |
submitter keyword: Brachyspira, immunogenic proteins, exoproteome,shotgun proteomics, surfaceome |
Contact List
Montserrat Carrascal |
contact affiliation | CSIC-UAB Proteomics Laboratory IIBB-CSIC Rosello 161, 6 planta 08036 Barcelona Spain |
contact email | montserrat.carrascal.csic@uab.cat |
lab head | |
Montserrat Carrascal |
contact affiliation | IIBB-CSIC |
contact email | montserrat.carrascal.csic@uab.cat |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/07/PXD003900 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD003900
- Label: PRIDE project
- Name: The exposed proteomes of Brachyspira hyodysenteriae and B. pilosicoli