PXD003817

PXD003817 is an original dataset announced via ProteomeXchange.

Title	Tomato clade proteome - Green-fruited Solanum habrochaites lacks fruit-specific carotenogenesis due to metabolic and structural blocks
Description	Members of the tomato clade exhibit wide diversity in fruit coloration, growth habit, leaf morphology and mating preferences. However, the mechanisms governing inter-species diversity in fruit coloration are largely unknown. Therefore, a proteomic approach combined with carotenoid profiling and carotenogenic gene expression was used to decipher the diversity in carotenogenesis in green-fruited Solanum habrochaites, orange-fruited S. galapagense, and red-fruited S. pimpinellifolium with S. lycopersicum, cv. Ailsa Craig (tomato).
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:08:21.116.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Yellamaraju Sreelakshmi
SpeciesList	scientific name: Solanum lycopersicum; NCBI TaxID: 4081;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue; deamidated residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2016-03-18 07:15:28	ID requested
1	2017-10-09 07:00:37	announced
2	2017-10-26 03:13:37	announced	Updated publication reference for PubMed record(s): 29048567.
⏵ 3	2024-10-22 04:08:22	announced	2024-10-22: Updated project metadata.

10.1093/jxb/erx288;

Kilambi HV, Manda K, Rai A, Charakana C, Bagri J, Sharma R, Sreelakshmi Y, Green-fruited Solanum habrochaites lacks fruit-specific carotenogenesis due to metabolic and structural blocks. J Exp Bot, 68(17):4803-4819(2017) [pubmed]

curator keyword: Biological

submitter keyword: Red/orange and green fruited species, fruit proteome, tomato clade, chlorophyll degradation, chromoplast formation

Yellamaraju Sreelakshmi
contact affiliation	Repository of Tomato Genomics Resources, Department of Plant Sciences, University of Hyderabad, Hyderabad 500046, India
contact email	syellamaraju@gmail.com
lab head
Yellamaraju Sreelakshmi
contact affiliation	Associate Professor at University of Hyderabad
contact email	syellamaraju@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/10/PXD003817

PRIDE project URI

• PRIDE
  1. PXD003817
     1. Label: PRIDE project
     2. Name: Tomato clade proteome - Green-fruited Solanum habrochaites lacks fruit-specific carotenogenesis due to metabolic and structural blocks