PXD003798

PXD003798 is an original dataset announced via ProteomeXchange.

Title	Studying the core circuitry of pluripotency by selective isolation of chromatin-associated proteins
Description	Here we have developed a method to identify chromatin-bound partners of a protein of interest by selective isolation of chromatin-associated proteins (SICAP) followed by mass spectrometry. We applied SICAP to identify chromatin-binding proteins associated to Oct4, Sox2 and Nanog in mouse embryonic stem (ES) cells.
HostingRepository	PRIDE
AnnounceDate	2017-10-24
AnnouncementXML	Submission_2017-10-24_03:08:17.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Mahmoud Reza Rafiee
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	acetylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2016-03-16 06:43:33	ID requested
1	2016-12-21 04:51:37	announced
⏵ 2	2017-10-24 03:08:18	announced	Updated project metadata.

Rafiee MR, Girardot C, Sigismondo G, Krijgsveld J, Expanding the Circuitry of Pluripotency by Selective Isolation of Chromatin-Associated Proteins. Mol Cell, 64(3):624-635(2016) [pubmed]

curator keyword: Biological

submitter keyword: SICAP, Chromatin, mouse embryonic stem cell, mass spectrometry

Prof. Dr. Jeroen Krijgsveld
contact affiliation	Prof. Jeroen Krijgsveld Genome Biology, EMBL & German Cancer Research Center (DKFZ) & University of Heidelberg, Medical Faculty
contact email	j.krijgsveld@dkfz-heidelberg.de
lab head
Mahmoud Reza Rafiee
contact affiliation	EMBL & DKFZ
contact email	biomedic84@yahoo.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/12/PXD003798

PRIDE project URI

• PRIDE
  1. PXD003798
     1. Label: PRIDE project
     2. Name: Studying the core circuitry of pluripotency by selective isolation of chromatin-associated proteins