PXD003768

PXD003768 is an original dataset announced via ProteomeXchange.

Title	Lotus seed development .
Description	Sacred lotus (Nelumbo nucifera) belongs to Nelumbonaceae family. Its seeds are widely consumed in Asia countries as snacks or even medicine. Besides the market values, lotus seed also plays crucial roles in lotus life cycle. Consequently, it is essential to gain a comprehensive understanding on the development of lotus seed. During its development, lotus seed undergoes cell division, expansion, reserve accumulation, desiccation and maturation phases. We observed the morphological and biochemical changes of lotus seed from 10 to 25 days after pollination (DAP) which was corresponding to the reserve synthesis and accumulation phase. The volume of the seed expanded until 20 DAP with the color of the seed coat changing from yellow-green to dark green and gradually faded again. Starch and protein rapidly accumulated from 15 to 20 DAP. To further reveal the metabolism adaptation, primary metabolites and proteins profiles were obtained from the mass spectrometry based platforms. Metabolites and enzymes involved in sugar metabolism, glycolysis, TCA cycle and amino acids metabolism schematized on their biosynthetic pathways. Both metabolic and proteomic profiles indicated more active metabolism from 10 to 15 DAP than after 20 DAP. The results provide a frame of reference for the evaluation of primary metabolism during lotus seed development.
HostingRepository	PRIDE
AnnounceDate	2024-10-07
AnnouncementXML	Submission_2024-10-07_10:03:32.169.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Lei Wang
SpeciesList	scientific name: Nelumbo nucifera (Sacred lotus); NCBI TaxID: 4432;
ModificationList	acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2016-03-11 00:57:36	ID requested
⏵ 1	2024-10-07 10:03:33	announced

10.3389/fpls.2016.00750;

Wang L, Fu J, Li M, Fragner L, Weckwerth W, Yang P, Metabolomic and Proteomic Profiles Reveal the Dynamics of Primary Metabolism during Seed Development of Lotus (Nelumbo nucifera). Front Plant Sci, 7():750(2016) [pubmed]

curator keyword: Biological

submitter keyword: LC-ESI-Orbitrap-MS, seed,Nelumbo nucifera

Pingfang Yang
contact affiliation	Key Laboratory of Plant Germplasm Enhancement and Speciality Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, Hubei, China
contact email	yangpf@wbgcas.cn
lab head
Lei Wang
contact affiliation	MOSYS, University of Vienna
contact email	lei.wang1031@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD003768

PRIDE project URI

• PRIDE
  1. PXD003768
     1. Label: PRIDE project
     2. Name: Lotus seed development