PXD003735 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Populus Palmitoylome |
Description | The aim of this work was to identify S-acylated proteins in poplar. In order to achieve this, we have combined the acyl-biotin exchange method with a mass spectrometry based proteomic approach. To date, this is the only study on S-acylated proteins in a tree species. In total, we identified around 450 S-acylated proteins, the majority of which are involved in signal transduction, response to stress and transport. |
HostingRepository | PRIDE |
AnnounceDate | 2016-05-09 |
AnnouncementXML | Submission_2016-05-09_02:29:06.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Vaibhav Srivastava |
SpeciesList | scientific name: Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa); NCBI TaxID: 3694; |
ModificationList | palmitoylated residue |
Instrument | Q-Tof ultima |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2016-03-03 01:37:56 | ID requested | |
⏵ 1 | 2016-05-09 02:29:08 | announced | |
Publication List
Srivastava V, Weber JR, Malm E, Fouke BW, Bulone V, Proteomic Analysis of a Poplar Cell Suspension Culture Suggests a Major Role of Protein S-Acylation in Diverse Cellular Processes. Front Plant Sci, 7():477(2016) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: Populus, S-acylation, spectral counting, mass spectrometry |
Contact List
Vincent Bulone |
contact affiliation | Division of Glycoscience, Royal Institute of Technology (KTH), AlbaNova University Centre, Stockholm, SE-10691, Sweden |
contact email | bulone@kth.se |
lab head | |
Vaibhav Srivastava |
contact affiliation | Biotechnology |
contact email | vasri@kth.se |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/05/PXD003735 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD003735
- Label: PRIDE project
- Name: Populus Palmitoylome