PXD003711

PXD003711 is an original dataset announced via ProteomeXchange.

Title	Proteomics analysis of soybean root exposed to varying sizes of silver nanoparticles under flooding stress
Description	Because of the tremendous use of NPs in the agricultural sector (Vernikov et al., 2009) and their interactions with the plants, the effect of NPs in plants needs to be explored at the molecular level. To investigate the effects of varying sizes of silver NPs on early-stage soybean under flooding stress, morphological and proteomic analyses were performed. In this study, 5 ppm silver NPs were used because 5 ppm of silver NPs were reported to promote the soybean growth under flooding stress (Mustafa et al., 2015). In the present study, the silver NPs induced changes, in the soybean proteins under flooding stress, was evaluated using gel-free proteomic technique.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:14:04.321.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Ghazala Mustafa
SpeciesList	scientific name: Glycine max; NCBI TaxID: 3847;
ModificationList	iodoacetamide derivatized residue
Instrument	LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2016-02-29 02:46:33	ID requested
1	2016-08-08 07:52:41	announced
⏵ 2	2024-10-22 04:14:06	announced	2024-10-22: Updated project metadata.

Mustafa G, Sakata K, Komatsu S, Proteomic analysis of soybean root exposed to varying sizes of silver nanoparticles under flooding stress. J Proteomics, 148():113-25(2016) [pubmed]

10.1016/j.jprot.2016.07.027;

curator keyword: Biological

submitter keyword: soybean, flooding stress, proteomics, silver nanoparticles, root

Setsuko Komatsu
contact affiliation	NARO Institute of Crop Science, Tsukuba, Japan
contact email	komatsu.setsuko.fu@u.tsukuba.ac.jp
lab head
Ghazala Mustafa
contact affiliation	NARO Institute of Crop Science, University of Tsukuba
contact email	ghazalamustafa@affrc.go.jp
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/08/PXD003711

PRIDE project URI

• PRIDE
  1. PXD003711
     1. Label: PRIDE project
     2. Name: Proteomics analysis of soybean root exposed to varying sizes of silver nanoparticles under flooding stress