PXD003639

PXD003639 is an original dataset announced via ProteomeXchange.

Title	So ce56 secretome LC-MS/MS .
Description	In this work, the secretome of the aerobic soil bacterium Sorangium cellulosum So ce56 was studied and the main hemicellulases for the degradation of arabinoxylan, avicel, wheat straw and oat spelts xylan were determined. For this purpose, bacterial cultures were set in triplicate for each substrate as well as for the basic medium CNS, which contained no lignocellulose substrate. Samples from the supernatants were taken after 5, 10 and 15 days of cultivation. After LC-MS/MS analysis, the secreted hemicellulases were identified and relatively quantified.
HostingRepository	PRIDE
AnnounceDate	2024-10-07
AnnouncementXML	Submission_2024-10-07_10:03:20.179.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD003639
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Alexander Graf
SpeciesList	scientific name: Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain So ce56)); NCBI TaxID: 448385;
ModificationList	Oxidation; Carbamidomethyl
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2016-02-15 08:24:50	ID requested
⏵ 1	2024-10-07 10:03:20	announced

Dataset with its publication pending

curator keyword: Biological

submitter keyword: biomass degradation, secretion, hemicellulases, Sorangium cellulosum

Mueller-Roeber
contact affiliation	University of Potsdam, Institute of Biochemistry and Biology, Molecular Biology Department. Potsdam (Germany).
contact email	bmr@uni-potsdam.de
lab head
Alexander Graf
contact affiliation	Max Planck Institute of Molekular Plant Physiology
contact email	graf@mpimp-golm.mpg.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/03/PXD003639

PRIDE project URI

• PRIDE
  1. PXD003639
     1. Label: PRIDE project
     2. Name: So ce56 secretome LC-MS/MS