PXD003588

PXD003588 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Nano Random Forests to mine proteomics data for protein complexes and their relationships in quantitative proteomics data
Description	This project has integrated SILAC proteomics data of wild type and knockout mitotic chromosomes, and used machine learning technique random forests to identify chromosomal complexes with high precision, and small training sets.
HostingRepository	PRIDE
AnnounceDate	2018-10-26
AnnouncementXML	Submission_2018-10-26_02:11:47.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Luis Montano
SpeciesList	scientific name: Gallus gallus (Chicken); NCBI TaxID: 9031;
ModificationList	No PTMs are included in the dataset
Instrument	LTQ Orbitrap

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2016-02-08 05:27:03	ID requested
⏵ 1	2018-10-26 02:11:49	announced

Publication List

Monta, ñ, o-Gutierrez LF, Ohta S, Kustatscher G, Earnshaw WC, Rappsilber J, Nano Random Forests to mine protein complexes and their relationships in quantitative proteomics data. Mol Biol Cell, 28(5):673-680(2017) [pubmed]

Monta, ñ, o-Gutierrez LF, Ohta S, Kustatscher G, Earnshaw WC, Rappsilber J, Nano Random Forests to mine protein complexes and their relationships in quantitative proteomics data. Mol Biol Cell, 28(5):673-680(2017) [pubmed]

Keyword List

curator keyword: Technical
submitter keyword: Machine learning, SILAC, mitotic chromosomes, chicken, SMC, kinetochore

curator keyword: Technical

submitter keyword: Machine learning, SILAC, mitotic chromosomes, chicken, SMC, kinetochore

Contact List

Juri Rappsilber
contact affiliation	University of Edinburgh
contact email	Juri.Rappsilber@ed.ac.uk
lab head
Luis Montano
contact affiliation	University of Edinburgh
contact email	nando.mgu@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD003588
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD003588

PRIDE project URI

Repository Record List

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