PXD003539

PXD003539 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	NCI60 proteome by PCT-SWATH - Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines
Description	We obtained quantitative analysis of the NCI-60 cell panels using pressure cycling technology (PCT) and SWATH-MS. Each cell was analyzed in duplicate. The data were analyzed using a cell line SWATH assay library and OpenSWATH, followed by SWATH-expert refinement.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:28:14.178.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Tiannan Guo
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	TripleTOF 5600

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2016-01-28 01:05:47	ID requested
1	2020-06-01 09:17:28	announced
⏵ 2	2024-10-22 04:28:17	announced	2024-10-22: Updated project metadata.

Publication List

10.1016/j.isci.2019.10.059;
Guo T, Luna A, Rajapakse VN, Koh CC, Wu Z, Liu W, Sun Y, Gao H, Menden MP, Xu C, Calzone L, Martignetti L, Auwerx C, Buljan M, Banaei-Esfahani A, Ori A, Iskar M, Gillet L, Bi R, Zhang J, Zhang H, Yu C, Zhong Q, Varma S, Schmitt U, Qiu P, Zhang Q, Zhu Y, Wild PJ, Garnett MJ, Bork P, Beck M, Liu K, Saez-Rodriguez J, Elloumi F, Reinhold WC, Sander C, Pommier Y, Aebersold R, Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines. iScience, 21():664-680(2019) [pubmed]

10.1016/j.isci.2019.10.059;

Guo T, Luna A, Rajapakse VN, Koh CC, Wu Z, Liu W, Sun Y, Gao H, Menden MP, Xu C, Calzone L, Martignetti L, Auwerx C, Buljan M, Banaei-Esfahani A, Ori A, Iskar M, Gillet L, Bi R, Zhang J, Zhang H, Yu C, Zhong Q, Varma S, Schmitt U, Qiu P, Zhang Q, Zhu Y, Wild PJ, Garnett MJ, Bork P, Beck M, Liu K, Saez-Rodriguez J, Elloumi F, Reinhold WC, Sander C, Pommier Y, Aebersold R, Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines. iScience, 21():664-680(2019) [pubmed]

Keyword List

curator keyword: Technical, Biological
submitter keyword: NCI-60 cell
PCT
SWATH
breast cancer
luekemia
colon cancer
melanoma
ovarian cancer
brain tumor
renal cancer
lung cancer
prostate cancer
drug sensitivity;

curator keyword: Technical, Biological

submitter keyword: NCI-60 cell

PCT

SWATH

breast cancer

luekemia

colon cancer

melanoma

ovarian cancer

brain tumor

renal cancer

lung cancer

prostate cancer

drug sensitivity;

Contact List

Ruedi Aebersold
contact affiliation	1, Department of Biology, Institute of Molecular Systems Biology, ETH, Zurich, Switzerland 2, Faculty of Science, University of Zurich, Zurich, Switzerland
contact email	aebersold@imsb.biol.ethz.ch
lab head
Tiannan Guo
contact affiliation	Westlake University
contact email	tiannan.guo@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/06/PXD003539
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/06/PXD003539

PRIDE project URI

Repository Record List

[ + ]