PXD003501 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | G4 Quadruplex Binding Proteins |
Description | In this study we discover proteins that bind to G4 quadruplex DNA structure. We use modified c-myc quadruplex as a bait, and compare it to the control bait - T15 oligo. We use spectral counts and G-test to determine significant binders. T15 and G4 datafiles are uploaded |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:27:43.871.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Boris Zybailov |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | No PTMs are included in the dataset |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2016-01-21 02:42:16 | ID requested | |
1 | 2021-03-04 12:08:54 | announced | |
⏵ 2 | 2024-10-22 04:27:46 | announced | 2024-10-22: Updated project metadata. |
Publication List
Byrd AK, Zybailov BL, Maddukuri L, Gao J, Marecki JC, Jaiswal M, Bell MR, Griffin WC, Reed MR, Chib S, Mackintosh SG, MacNicol AM, Baldini G, Eoff RL, Raney KD, Evidence That G-quadruplex DNA Accumulates in the Cytoplasm and Participates in Stress Granule Assembly in Response to Oxidative Stress. J Biol Chem, 291(34):18041-57(2016) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: Metastatic Melanoma WM 266-4 cell lines |
Contact List
Boris Zybaylov |
contact affiliation | University of Arkansas for Medical Sciences, Department of Biochemistry and Molecular Biology |
contact email | BLZybaylov@UAMS.EDU |
lab head | |
Boris Zybailov |
contact affiliation | Biochemistry and Molecular Biology |
contact email | boriszybailov@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/07/PXD003501 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD003501
- Label: PRIDE project
- Name: G4 Quadruplex Binding Proteins