PXD003405

PXD003405 is an original dataset announced via ProteomeXchange.

Title	Dinosaur: refined open source peptide MS feature detector
Description	In order to test the usability of the new MS feature detection algorithm Dinosaur, 8 samples were analyzed. These were selected to represent different proteomics experiments and cover the full range of sample different complexities, from synthetic peptides to whole tissue lysate. This project evolves around the development of a new MS1 feature detection tool, and the files were only used for MS1 feature detection and analysis. Therefore, no identification files exist and there is no scientific interest in generating these.
HostingRepository	PRIDE
AnnounceDate	2016-06-08
AnnouncementXML	Submission_2016-06-08_03:17:06.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Johan Teleman
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; scientific name: Streptococcus pyogenes serotype M1 (strain ATCC BAA-947 / MGAS5005); NCBI TaxID: 293653;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2016-01-05 02:19:43	ID requested
⏵ 1	2016-06-08 03:17:07	announced

Teleman J, Chawade A, Sandin M, Levander F, Malmstr, ö, m J, Dinosaur: A Refined Open-Source Peptide MS Feature Detector. J Proteome Res, 15(7):2143-51(2016) [pubmed]

submitter keyword: Feature detection, Dinosaur, Plot trail

Johan Malmström
contact affiliation	Dept. of Clinical Sciences Lund, Lund University, Sweden
contact email	johan.malmstrom@immun.lth.se
lab head
Johan Teleman
contact affiliation	Lund University
contact email	johan.teleman@immun.lth.se
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/06/PXD003405

PRIDE project URI

• PRIDE
  1. PXD003405
     1. Label: PRIDE project
     2. Name: Dinosaur: refined open source peptide MS feature detector