PXD003229 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Comprehensive Proteomic Analysis of Nitrogen Starved Mycobacterium smegmatis Δpup Reveals the Impact of Pupylation on Nitrogen Stress Response |
Description | Mycobacterium smegmatis is a soil bacterium exposed to continuously environmental changes of nitrogen availability. As member of Actinobacteria, it possesses an ubiquitin-like post-translational modification pathway called pupylation. The pathway starts when a small protein called Pup is attached to a lysine of a specific cellular target. Then the Pup-modified protein is degraded by the proteasome, as it was shown that Pup acts as degradation signal. Recent studies showed the role of pupylation in Mycobacterium smegmatis for survival under nitrogen starvation by supplying recycled amino acids. The present study is an investigation of the influence of Mycobacterium smegmatis Pup protein on the whole proteome in absence of nitrogen sources. Therefore a pup deletion mutant was generated. Applying stable isotope dimethyl labelling, low impact of the pupylation on proteome was revealed immediately after exposure to growth medium lacking nitrogen. In contrast, post 24 h of nitrogen starvation, Msm pup deletion strain showed several proteins with significant changes in abundance. Noteworthy, key proteins involved in nitrogen assimilation were significantly affected in Msm Δpup. Furthermore, we label-free quantified pupylated proteins of nitrogen starved Msm for a more extensive understanding of pupylation role in surviving and overcoming the lack of nitrogen. |
HostingRepository | PRIDE |
AnnounceDate | 2016-08-11 |
AnnouncementXML | Submission_2016-08-11_02:45:51.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Giuseppina Fascellaro |
SpeciesList | scientific name: Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155); NCBI TaxID: 246196; |
ModificationList | No PTMs are included in the dataset |
Instrument | LTQ Orbitrap XL; Orbitrap Fusion |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2015-11-24 23:21:16 | ID requested | |
⏵ 1 | 2016-08-11 02:45:52 | announced | |
Publication List
Fascellaro G, Petrera A, Lai ZW, Nanni P, Grossmann J, Burger S, Biniossek ML, Gomez-Auli A, Schilling O, Imkamp F, pup Reveals the Impact of Pupylation on Nitrogen Stress Response. J Proteome Res, 15(8):2812-25(2016) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: pupylation, Mycobacterium smegmatis, nitrogen starvation, quantitative proteomics |
Contact List
Frank Imkamp |
contact affiliation | University of Zurich, Institute of Medical Microbiology, Zurich, Switzerland |
contact email | imkamp@imm.uzh.ch |
lab head | |
Giuseppina Fascellaro |
contact affiliation | University of Zurich |
contact email | gfascellaro@imm.uzh.ch |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD003229
- Label: PRIDE project
- Name: Comprehensive Proteomic Analysis of Nitrogen Starved Mycobacterium smegmatis Δpup Reveals the Impact of Pupylation on Nitrogen Stress Response