PXD003195

PXD003195 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Rickettsia slovaca intra cellular bacteria global proteome
Description	Semi quantitative intracellular bacteria proteome using a 2D nanoLC-M/MS analysis system enabling a maximum sample exploration. This setup was helpful to analyse this complex sample composed of peptides from the studied bacteria and its host. Sample was doped before injection in order to calculate protein quantities using the Hi3 absolute quantification technique.
HostingRepository	PRIDE
AnnounceDate	2018-10-25
AnnouncementXML	Submission_2018-10-25_10:31:51.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD003195
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	ARMSTRONG Nicholas
SpeciesList	scientific name: Rickettsia slovaca (strain 13-B); NCBI TaxID: 941638;
ModificationList	iodoacetamide derivatized residue: 57.02146; monohydroxylated residue: 15.99491; deamidated residue: 0.984
Instrument	Synapt G2-S HDMS

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2015-11-16 06:03:16	ID requested
⏵ 1	2018-10-25 10:31:52	announced

Publication List

El Karkouri K, Kowalczewska M, Armstrong N, Azza S, Fournier PE, Raoult D, spp. Front Microbiol, 8():1363(2017) [pubmed]

El Karkouri K, Kowalczewska M, Armstrong N, Azza S, Fournier PE, Raoult D, spp. Front Microbiol, 8():1363(2017) [pubmed]

Keyword List

curator keyword: Biological
submitter keyword: Rickettsia, HDMSe, Hi3, Xenopus laevis

curator keyword: Biological

submitter keyword: Rickettsia, HDMSe, Hi3, Xenopus laevis

Contact List

Eric Chabriere
contact affiliation	Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes (URMITE) UMR 6236, Faculté de médecine 27 Bd Jean Moulin 13385 MARSEILLE Cedex 05 FRANCE
contact email	eric.chabriere@univ-amu.fr
lab head
ARMSTRONG Nicholas
contact affiliation	MS Engineer
contact email	nicholas.armstrong@univ-amu.fr
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD003195
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD003195

PRIDE project URI

Repository Record List

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