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PXD003190

DataSet Summary

  • HostingRepository: PRIDE
  • AnnounceDate: 2016-09-27
  • AnnouncementXML: Submission_2016-09-27_13:04:29.xml
  • DigitalObjectIdentifier:
  • ReviewLevel: Peer-reviewed dataset
  • DatasetOrigin: Original data
  • RepositorySupport: Unsupported dataset by repository
  • PrimarySubmitter: Frido Welker
  • Title: COL1 database samples for the Late Pleistocene of Western Eurasia
  • Description: The project aimed to characterize the collagen type I (COL1) sequences from various modern, Holocene and Pleistocene bone, antler and skin samples for phylogenetic purposes. All extractions were performed at BioArCh, University of York (UK) or the Department of Human Evolution, MPI-EVA (Germany). Analyses took place on Q-Exactive Hybrid Quadrupole-Orbitrap MS.
  • SpeciesList: scientific name: Saiga tatarica (Saiga antelope); NCBI TaxID: 34875; scientific name: Megaloceros giganteus (Giant deer) (Alces gigantea); NCBI TaxID: 227166; scientific name: Axis axis (Axis deer) (Chital); NCBI TaxID: 30531; scientific name: Rangifer tarandus (Reindeer) (Cervus tarandus); NCBI TaxID: 9870; scientific name: Lynx lynx (Eurasian lynx) (Felis lynx); NCBI TaxID: 13125; scientific name: Martes martes (European pine marten); NCBI TaxID: 29065; scientific name: Vulpes lagopus (Arctic fox) (Alopex lagopus); NCBI TaxID: 494514; scientific name: Capreolus capreolus (Roe deer); NCBI TaxID: 9858; scientific name: Ursus americanus (American black bear) (Euarctos americanus); NCBI TaxID: 9643; scientific name: Gulo gulo (Wolverine) (Gluton); NCBI TaxID: 48420; scientific name: Ursus arctos (Brown bear) (Grizzly bear); NCBI TaxID: 9644; scientific name: Vulpes vulpes (Red fox); NCBI TaxID: 9627; scientific name: Aepyceros melampus (Impala); NCBI TaxID: 9897; scientific name: Panthera leo (Lion); NCBI TaxID: 9689; scientific name: Ursus maritimus (Polar bear) (Thalarctos maritimus); NCBI TaxID: 29073; scientific name: Cuon alpinus (Dhole); NCBI TaxID: 68730; scientific name: Lutra lutra (European river otter); NCBI TaxID: 9657; scientific name: Alces alces (Eurasian elk); NCBI TaxID: 9852; scientific name: Crocuta crocuta (Spotted hyena); NCBI TaxID: 9678; scientific name: Cervus elaphus (Red deer); NCBI TaxID: 9860; scientific name: Capra ibex (Ibex); NCBI TaxID: 72542; scientific name: Equus hydruntinus; NCBI TaxID: 379504; scientific name: Coelodonta antiquitatis (woolly rhinoceros); NCBI TaxID: 222863; scientific name: Rupicapra rupicapra (Chamois); NCBI TaxID: 34869; scientific name: Castor fiber (Eurasian beaver); NCBI TaxID: 10185; scientific name: Meles meles (Eurasian badger); NCBI TaxID: 9662;
  • ModificationList: monohydroxylated lysine; monohydroxylated residue; monohydroxylated proline; deamidated residue
  • Instrument: Q Exactive

Dataset History

VersionDatetimeStatusChangeLog Entry
02015-11-16 01:44:07ID requested
12016-09-27 13:04:30announced

Publication List

  1. Welker F, Hajdinjak M, Talamo S, Jaouen K, Dannemann M, David F, Julien M, Meyer M, Kelso J, Barnes I, Brace S, Kamminga P, Fischer R, Kessler BM, Stewart JR, Pääbo S, Collins MJ, Hublin JJ, Palaeoproteomic evidence identifies archaic hominins associated with the Châtelperronian at the Grotte du Renne. Proc Natl Acad Sci U S A, 113(40):11162-11167(2016) [pubmed]

Keyword List

  1. curator keyword: Biological
  2. submitter keyword: LC-MS/MS, Q-Exactive Hybrid Quadrupole-Orbitrap MS, de novo collagen sequencing, Mammalia

Contact List

    Matthew Collins
    • contact affiliation: BioArCh, University of York, United Kingdom
    • contact email: matthew.collins@york.ac.uk
    • lab head:
    Frido Welker
    • contact affiliation: PhD candidate: Department of Human Evolution, MPI-EVA. Associate Researcher: BioArCh, Department of Archaeology, University of York
    • contact email: frido.welker@palaeo.eu
    • dataset submitter:

Full Dataset Link List

  1. Dataset FTP location
  2. PRIDE project URI
Repository Record List
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