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PXD003190

PXD003190 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleCOL1 database samples for the Late Pleistocene of Western Eurasia
DescriptionThe project aimed to characterize the collagen type I (COL1) sequences from various modern, Holocene and Pleistocene bone, antler and skin samples for phylogenetic purposes. All extractions were performed at BioArCh, University of York (UK) or the Department of Human Evolution, MPI-EVA (Germany). Analyses took place on Q-Exactive Hybrid Quadrupole-Orbitrap MS.
HostingRepositoryPRIDE
AnnounceDate2016-09-27
AnnouncementXMLSubmission_2016-09-27_13:04:29.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterFrido Welker
SpeciesList scientific name: Saiga tatarica (Saiga antelope); NCBI TaxID: 34875; scientific name: Megaloceros giganteus (Giant deer) (Alces gigantea); NCBI TaxID: 227166; scientific name: Axis axis (Axis deer) (Chital); NCBI TaxID: 30531; scientific name: Rangifer tarandus (Reindeer) (Cervus tarandus); NCBI TaxID: 9870; scientific name: Lynx lynx (Eurasian lynx) (Felis lynx); NCBI TaxID: 13125; scientific name: Martes martes (European pine marten); NCBI TaxID: 29065; scientific name: Vulpes lagopus (Arctic fox) (Alopex lagopus); NCBI TaxID: 494514; scientific name: Capreolus capreolus (Roe deer); NCBI TaxID: 9858; scientific name: Ursus americanus (American black bear) (Euarctos americanus); NCBI TaxID: 9643; scientific name: Gulo gulo (Wolverine) (Gluton); NCBI TaxID: 48420; scientific name: Ursus arctos (Brown bear) (Grizzly bear); NCBI TaxID: 9644; scientific name: Vulpes vulpes (Red fox); NCBI TaxID: 9627; scientific name: Aepyceros melampus (Impala); NCBI TaxID: 9897; scientific name: Panthera leo (Lion); NCBI TaxID: 9689; scientific name: Ursus maritimus (Polar bear) (Thalarctos maritimus); NCBI TaxID: 29073; scientific name: Cuon alpinus (Dhole); NCBI TaxID: 68730; scientific name: Lutra lutra (European river otter); NCBI TaxID: 9657; scientific name: Alces alces (Eurasian elk); NCBI TaxID: 9852; scientific name: Crocuta crocuta (Spotted hyena); NCBI TaxID: 9678; scientific name: Cervus elaphus (Red deer); NCBI TaxID: 9860; scientific name: Capra ibex (Ibex); NCBI TaxID: 72542; scientific name: Equus hydruntinus; NCBI TaxID: 379504; scientific name: Coelodonta antiquitatis (woolly rhinoceros); NCBI TaxID: 222863; scientific name: Rupicapra rupicapra (Chamois); NCBI TaxID: 34869; scientific name: Castor fiber (Eurasian beaver); NCBI TaxID: 10185; scientific name: Meles meles (Eurasian badger); NCBI TaxID: 9662;
ModificationListmonohydroxylated lysine; monohydroxylated residue; monohydroxylated proline; deamidated residue
InstrumentQ Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02015-11-16 01:44:07ID requested
12016-09-27 13:04:30announced
Publication List
Welker F, Hajdinjak M, Talamo S, Jaouen K, Dannemann M, David F, Julien M, Meyer M, Kelso J, Barnes I, Brace S, Kamminga P, Fischer R, Kessler BM, Stewart JR, Pääbo S, Collins MJ, Hublin JJ, Palaeoproteomic evidence identifies archaic hominins associated with the Châtelperronian at the Grotte du Renne. Proc Natl Acad Sci U S A, 113(40):11162-11167(2016) [pubmed]
Keyword List
curator keyword: Biological
submitter keyword: LC-MS/MS, Q-Exactive Hybrid Quadrupole-Orbitrap MS, de novo collagen sequencing, Mammalia
Contact List
Matthew Collins
contact affiliationBioArCh, University of York, United Kingdom
contact emailmatthew.collins@york.ac.uk
lab head
Frido Welker
contact affiliationPhD candidate: Department of Human Evolution, MPI-EVA. Associate Researcher: BioArCh, Department of Archaeology, University of York
contact emailfrido.welker@palaeo.eu
dataset submitter
Full Dataset Link List
Dataset FTP location
PRIDE project URI
Repository Record List
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