PXD003112

PXD003112 is an original dataset announced via ProteomeXchange.

Title	Quantitative proteomics of CELF1-silenced human melanoma cell lines
Description	CELF1 was silenced in two human melanoma cell lines (SKMEL-103 and UACC-62, indicated as 9M and 17M, respectively) using short hairpin RNA (tag 114). As control scrambled non targeting shControl transduced cell were used (tag 115).
HostingRepository	PRIDE
AnnounceDate	2017-12-21
AnnouncementXML	Submission_2018-01-02_02:45:34.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Pilar Ximenez-Embun
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	iTRAQ4plex-116 reporter+balance reagent acylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2015-10-27 04:59:20	ID requested
1	2017-12-21 04:30:48	announced
⏵ 2	2018-01-02 02:45:35	announced	Updated publication reference for PubMed record(s): 29269732.

Cifdaloz M, Osterloh L, Gra, ñ, a O, Riveiro-Falkenbach E, Xim, é, nez-Emb, ú, n P, Mu, ñ, oz J, Tejedo C, Calvo TG, Karras P, Olmeda D, Mi, ñ, ana B, G, ó, mez-L, ó, pez G, Ca, ñ, on E, Eyras E, Guo H, Kappes F, Ortiz-Romero PL, Rodr, í, guez-Peralto JL, Meg, í, as D, Valc, á, rcel J, Soengas MS, Systems analysis identifies melanoma-enriched pro-oncogenic networks controlled by the RNA binding protein CELF1. Nat Commun, 8(1):2249(2017) [pubmed]

curator keyword: Biomedical

submitter keyword: Human, melanoma, CELF1,LC-MS/MS, iTRAQ, Velos Orbitrap

Javier Muñoz Peralta
contact affiliation	Proteomics Unit, CNIO, Spain
contact email	jmunozpe@cnio.es
lab head
Pilar Ximenez-Embun
contact affiliation	Proteomics Group
contact email	mpximenez@cnio.es
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/12/PXD003112

PRIDE project URI

• PRIDE
  1. PXD003112
     1. Label: PRIDE project
     2. Name: Quantitative proteomics of CELF1-silenced human melanoma cell lines