PXD003086 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Effect of cigarette smoke on microRNA expression in H292 lung cancer cells |
Description | Cigarette smoke has been associated with the development of various lung diseases including cancer. Dysregulation of miRNAs is known to affect protein expression which leads to diverse functional consequences. Investigating miRNA and protein expression in response to cigarette smoke exposure can lead to the identification of potential therapeutic and chemopreventive targets. We employed a SILAC-based quantitative proteomic analysis to identify proteins differentially expressed in response to cigarette smoke in H292 lung cancer cells. LC-MS/MS analysis led to the identification of 3,959 proteins, of which, 303 proteins were overexpressed and 112 proteins were found to be downregulated in cigarette smoke-treated H292 cells. |
HostingRepository | PRIDE |
AnnounceDate | 2018-10-25 |
AnnouncementXML | Submission_2018-10-25_04:02:18.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Akhilesh Pandey |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | 6x(13)C labeled residue; monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2015-10-20 07:14:15 | ID requested | |
⏵ 1 | 2018-10-25 04:02:19 | announced | |
Publication List
Advani J, Subbannayya Y, Patel K, Khan AA, Patil AH, Jain AP, Solanki HS, Radhakrishnan A, Pinto SM, Sahasrabuddhe NA, Thomas JK, Mathur PP, Nair BG, Chang X, Prasad TSK, Sidransky D, Gowda H, Chatterjee A, Long-Term Cigarette Smoke Exposure and Changes in MiRNA Expression and Proteome in Non-Small-Cell Lung Cancer. OMICS, 21(7):390-403(2017) [pubmed] |
Keyword List
curator keyword: Biomedical |
submitter keyword: Lung cancer, mass spectrometry, miRNA |
Contact List
Akhilesh Pandey |
contact affiliation | McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205 USA |
contact email | pandey@jhmi.edu |
lab head | |
Akhilesh Pandey |
contact affiliation | Johns Hopkins University |
contact email | pandey@jhmi.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD003086 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD003086
- Label: PRIDE project
- Name: Effect of cigarette smoke on microRNA expression in H292 lung cancer cells