PXD003010 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Tomato xylem proteome composition following infection by Fusarium oxysporum |
Description | The influence of during colonization by Fusarium oxysporum f. sp. Lycopersici secreted effector proteins on the proteome of the xylem sap of tomato plants was investigated using a label-free quantitative proteomics approach. A comparison was made between plants inoculated with either a mock control, a non-effector knockout control, Fusarium oxysporum Fol007 wildtype and four Fol007 single effector protein knockout strains. Specific effects on the relative abundance of certain proteins of the xylem sap occurred for the different knockout strains next to a core set of 24 differentially accumulated proteins which may provide insights into the mechanisms of promoting infection for each of the tested effector proteins. |
HostingRepository | PRIDE |
AnnounceDate | 2015-10-26 |
AnnouncementXML | Submission_2015-11-23_04:07:07.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Sjef Boeren |
SpeciesList | scientific name: Fusarium oxysporum f. sp. lycopersici; NCBI TaxID: 59765; scientific name: Solanum lycopersicum; NCBI TaxID: 4081; |
ModificationList | iodoacetamide derivatized residue; deaminated residue |
Instrument | LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2015-10-06 01:26:49 | ID requested | |
1 | 2015-10-26 03:13:47 | announced | |
⏵ 2 | 2015-11-23 04:07:09 | announced | Updated publication reference for PubMed record(s): 26583031. |
Publication List
Gawehns F, Ma L, Bruning O, Houterman PM, Boeren S, Cornelissen BJ, Rep M, Takken FL, The effector repertoire of Fusarium oxysporum determines the tomato xylem proteome composition following infection. Front Plant Sci, 6():967(2015) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: Tomato, Xylem sap proteome, Fungus, Fusarium oxysporum, LTQ-Orbitrap XL |
Contact List
Sjef Boeren |
contact affiliation | Wageningen University |
contact email | sjef.boeren@wur.nl |
lab head | |
Sjef Boeren |
contact affiliation | Biochemistry |
contact email | sjef.boeren@wur.nl |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD003010
- Label: PRIDE project
- Name: Tomato xylem proteome composition following infection by Fusarium oxysporum