PXD003010

PXD003010 is an original dataset announced via ProteomeXchange.

Title	Tomato xylem proteome composition following infection by Fusarium oxysporum
Description	The influence of during colonization by Fusarium oxysporum f. sp. Lycopersici secreted effector proteins on the proteome of the xylem sap of tomato plants was investigated using a label-free quantitative proteomics approach. A comparison was made between plants inoculated with either a mock control, a non-effector knockout control, Fusarium oxysporum Fol007 wildtype and four Fol007 single effector protein knockout strains. Specific effects on the relative abundance of certain proteins of the xylem sap occurred for the different knockout strains next to a core set of 24 differentially accumulated proteins which may provide insights into the mechanisms of promoting infection for each of the tested effector proteins.
HostingRepository	PRIDE
AnnounceDate	2015-10-26
AnnouncementXML	Submission_2015-11-23_04:07:07.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Sjef Boeren
SpeciesList	scientific name: Fusarium oxysporum f. sp. lycopersici; NCBI TaxID: 59765; scientific name: Solanum lycopersicum; NCBI TaxID: 4081;
ModificationList	iodoacetamide derivatized residue; deaminated residue
Instrument	LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2015-10-06 01:26:49	ID requested
1	2015-10-26 03:13:47	announced
⏵ 2	2015-11-23 04:07:09	announced	Updated publication reference for PubMed record(s): 26583031.

Gawehns F, Ma L, Bruning O, Houterman PM, Boeren S, Cornelissen BJ, Rep M, Takken FL, The effector repertoire of Fusarium oxysporum determines the tomato xylem proteome composition following infection. Front Plant Sci, 6():967(2015) [pubmed]

curator keyword: Biological

submitter keyword: Tomato, Xylem sap proteome, Fungus, Fusarium oxysporum, LTQ-Orbitrap XL

Sjef Boeren
contact affiliation	Wageningen University
contact email	sjef.boeren@wur.nl
lab head
Sjef Boeren
contact affiliation	Biochemistry
contact email	sjef.boeren@wur.nl
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/10/PXD003010

PRIDE project URI

• PRIDE
  1. PXD003010
     1. Label: PRIDE project
     2. Name: Tomato xylem proteome composition following infection by Fusarium oxysporum