PXD002980

PXD002980 is an original dataset announced via ProteomeXchange.

Title	Tomato quantitative proteome
Description	Identification of protease targets is essential to understand the molecular mechanism by which a protease regulates the biological processes. In this study, we applied an iTRAQ-based quantitative proteomic approach to identify the potential targets of a vacuolar processing enzyme in the cellular context in tomato. Proteins were isolated from fruits of wild-type and RNAi tomato plants. More than 300 proteins were finally screened as significantly altered in the RNAi fruits. Based on Blast2go, a web-based bioinformatic tool that categorizes proteins according to their Gene Ontology (GO) annotations, the proteins experienced significant changes in abundance in the RNAi fruits were classified into fifteen functional categories.
HostingRepository	PRIDE
AnnounceDate	2017-02-20
AnnouncementXML	Submission_2017-03-15_08:19:47.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Guozheng Qin
SpeciesList	scientific name: Solanum lycopersicum; NCBI TaxID: 4081;
ModificationList	iodoacetamide derivatized residue
Instrument	TripleTOF 5600

Revision	Datetime	Status	ChangeLog Entry
0	2015-09-28 02:34:46	ID requested
1	2017-02-20 03:35:59	announced
⏵ 2	2017-03-15 08:19:48	announced	Updated publication reference for PubMed record(s): 28270225.

Wang W, Cai J, Wang P, Tian S, Qin G, Post-transcriptional regulation of fruit ripening and disease resistance in tomato by the vacuolar protease SlVPE3. Genome Biol, 18(1):47(2017) [pubmed]

curator keyword: Biological

submitter keyword: tomato, LC-MS/MS

Guozheng Qin
contact affiliation	Institute of Botany, Chinese Academy of Sciences
contact email	gzqin@ibcas.ac.cn
lab head
Guozheng Qin
contact affiliation	Institute of Botany, Chinese Academy of Sciences
contact email	gzqin@ibcas.ac.cn
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/02/PXD002980

PRIDE project URI

• PRIDE
  1. PXD002980
     1. Label: PRIDE project
     2. Name: Tomato quantitative proteome