PXD002967

PXD002967 is an original dataset announced via ProteomeXchange.

Title	Improving Human Genome Annotation Using a High-Stringency Proteogenomics Workflow
Description	Reanalysis of three large human tissue proteomics datasets using a bespoke GENCODE database and multiOTHER algorithm high confidence pipeline.
HostingRepository	PRIDE
AnnounceDate	2016-05-27
AnnouncementXML	Submission_2016-06-06_04:45:28.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	James Wright
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	2-pyrrolidone-5-carboxylic acid (Glu); monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue; 2-pyrrolidone-5-carboxylic acid (Gln)
Instrument	LTQ Orbitrap Velos; LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2015-09-24 03:58:46	ID requested
1	2016-05-27 04:38:55	announced
⏵ 2	2016-06-06 04:45:29	announced	Updated publication reference for PubMed record(s): 27250503.

Wright JC, Mudge J, Weisser H, Barzine MP, Gonzalez JM, Brazma A, Choudhary JS, Harrow J, Improving GENCODE reference gene annotation using a high-stringency proteogenomics workflow. Nat Commun, 7():11778(2016) [pubmed]

curator keyword: Biological, Technical

submitter keyword: human, proteome, proteogenomics, GENCODE, tissue

Jyoti Choudhary
contact affiliation	Wellcome Trust Sanger Institute
contact email	jc4@sanger.ac.uk
lab head
James Wright
contact affiliation	Proteomic Mass Spectrometry, Wellcome Trust Sanger Institute
contact email	jw13@sanger.ac.uk
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/05/PXD002967

PRIDE project URI

• PRIDE
  1. PXD002967
     1. Label: PRIDE project
     2. Name: Improving Human Genome Annotation Using a High-Stringency Proteogenomics Workflow