PXD002917 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteome validation for novel full-length genes in the giant panda |
Description | we applied RNA-seq to detect novel expressed transcripts in 12 tissues of giant pandas, using a transcriptome reconstruction strategy combining reference-based and de novo methods. Then we used mass spectrometry method to identify proteomes of five selected tissues, aiming at validating these novel full-length genes we identified. |
HostingRepository | PRIDE |
AnnounceDate | 2015-12-23 |
AnnouncementXML | Submission_2015-12-23_01:03:05.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD002917 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Yibo Hu |
SpeciesList | scientific name: Ailuropoda melanoleuca (Giant panda); NCBI TaxID: 9646; |
ModificationList | iodoacetamide - site C: 57.021464 |
Instrument | LTQ |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2015-09-15 03:03:30 | ID requested | |
⏵ 1 | 2015-12-23 01:03:06 | announced | |
Publication List
Chen M, Hu Y, Liu J, Wu Q, Zhang C, Yu J, Xiao J, Wei F, Wu J, Improvement of genome assembly completeness and identification of novel full-length protein-coding genes by RNA-seq in the giant panda genome. Sci Rep, 5():18019(2015) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: giant panda, LC-LTQ, brain, ovary, testis, pituitary, tongue |
Contact List
Fuwen Wei |
contact affiliation | Institute of Zoology, Chinese Academy of Sciences, China |
contact email | weifw@ioz.ac.cn |
lab head | |
Yibo Hu |
contact affiliation | Institute of Zoology, CAS |
contact email | ybhu@ioz.ac.cn |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/12/PXD002917 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD002917
- Label: PRIDE project
- Name: Proteome validation for novel full-length genes in the giant panda