PXD002890 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | mRNA interactome in mouse macrophages |
Description | Proteins interacting with mRNA in mouse macrophages were identified by crosslinking and oligodT capture. Differential interaction was investigated in macrophages before and after treatment with LPS. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:29:53.125.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Sophia Foehr |
SpeciesList | scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2015-09-10 05:59:44 | ID requested | |
1 | 2016-06-13 07:26:22 | announced | |
⏵ 2 | 2024-10-22 04:30:01 | announced | 2024-10-22: Updated project metadata. |
Publication List
Liepelt A, Naarmann-de Vries IS, Simons N, Eichelbaum K, F, รถ, hr S, Archer SK, Castello A, Usadel B, Krijgsveld J, Preiss T, Marx G, Hentze MW, Ostareck DH, Ostareck-Lederer A, Identification of RNA-binding Proteins in Macrophages by Interactome Capture. Mol Cell Proteomics, 15(8):2699-714(2016) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: macrophage, protein interaction,mRNA |
Contact List
Jeroen Krijgsveld |
contact affiliation | German Cancer Research Center (DKFZ) |
contact email | j.krijgsveld@dkfz.de |
lab head | |
Sophia Foehr |
contact affiliation | DKFZ |
contact email | sophia.foehr@dkfz.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/06/PXD002890 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD002890
- Label: PRIDE project
- Name: mRNA interactome in mouse macrophages