PXD002849 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Glycoproteome of Elongating cotton fiber cells |
Description | Glycoproteins isolated from elongating cotton fiber cells were analyzed using 2D-PAGE followed by MALDI TOF/TOF based protein identification. Protein isoforms were identified using Tandem mass spectrometry. Lectin based Glycopeptide enrichment strategy followed by PNGase catalyzed deglycosylation reaction was employed to assign potential N-linked glycosylation sites. |
HostingRepository | PRIDE |
AnnounceDate | 2015-11-25 |
AnnouncementXML | Submission_2015-11-25_07:00:04.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD002849 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Saravanan Kumar |
SpeciesList | scientific name: Gossypium; NCBI TaxID: 3633; |
ModificationList | deamidated residue; monohydroxylated residue; iodoacetamide derivatized residue; carbamoylated residue |
Instrument | ultraflex |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2015-09-04 02:27:59 | ID requested | |
⏵ 1 | 2015-11-25 07:00:05 | announced | |
Publication List
Kumar S, Kumar K, Pandey P, Rajamani V, Padmalatha KV, Dhandapani G, Kanakachari M, Leelavathi S, Kumar PA, Reddy VS, Glycoproteome of elongating cotton fiber cells. Mol Cell Proteomics, 12(12):3677-89(2013) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: 2D PAGE, Glycopeptide approach, N-linked Glycosylation site assignment |
Contact List
Vanga Siva Reddy |
contact affiliation | Group Leader, Plant Transformation Group, International Centre for Genetic Engineering and Biotechnology (ICGEB), New Delhi, India |
contact email | vsreddy@gmail.com |
lab head | |
Saravanan Kumar |
contact affiliation | Doctoral Fellow, PTG, ICGEB |
contact email | saravanankumar.icgeb@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/11/PXD002849 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD002849
- Label: PRIDE project
- Name: Glycoproteome of Elongating cotton fiber cells