PXD002583

PXD002583 is an original dataset announced via ProteomeXchange.

Title	Comprehensive computational identification and characterization of conserved small ORFs in animals
Description	There is increasing evidence that transcripts or transcript regions annotated as non-coding can harbor functional short open reading frames (sORFs). Loss-of-function experiments have identified essential developmental or physiological roles for a few of the encoded peptides (micropeptides), but genome-wide experimental or computational identification of functional sORFs remains challenging. In this project we expand our previously developed method and present results of an integrated computational pipeline for the identification of conserved sORFs in human, mouse, zebrafish, fruit fly and the nematode C. elegans. This dataset represents the peaklist of identified novel and annotated mouse micropeptides by mass spectrometry.
HostingRepository	PRIDE
AnnounceDate	2015-07-28
AnnouncementXML	Submission_2015-07-28_09:38:48.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Henrik Zauber
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2015-07-21 05:48:20	ID requested
⏵ 1	2015-07-28 09:38:48	announced

Dataset with its publication pending

curator keyword: Biological

submitter keyword: Mouse, micropeptides, functional small open reading frames, sORFs

Matthias Selbach
contact affiliation	MDC Berlin-Buch
contact email	matthias.selbach@mdc-berlin.de
lab head
Henrik Zauber
contact affiliation	MDC Berlin-Buch
contact email	henrik.zauber@mdc-berlin.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/07/PXD002583

PRIDE project URI

• PRIDE
  1. PXD002583
     1. Label: PRIDE project
     2. Name: Comprehensive computational identification and characterization of conserved small ORFs in animals