PXD002575 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Zea mays AM fungi interaction |
Description | We describe a method that detects membrane proteins from cell type-specific plant plasma membrane subdomains. As the biochemical properties of membrane subdomains are often unknown, general membrane enrichment by continuous sucrose density gradient centrifugation was combined with filter-aided sample preparation, strong cation exchange pre-fractionation and sensitive LTQ Orbitrap Velos-based mass-spectrometry proteomics. This workflow identified plasma membrane proteins, including underrepresented proteins, at an unprecedented level of sensitivity and reproducibility. |
HostingRepository | PRIDE |
AnnounceDate | 2018-09-24 |
AnnouncementXML | Submission_2018-11-13_06:00:43.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD002575 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Marco Chiapello |
SpeciesList | scientific name: Zea mays (Maize); NCBI TaxID: 4577; |
ModificationList | Glu->pyro-Glu; Oxidation; Carbamidomethyl; Gln->pyro-Glu |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2015-07-21 02:09:33 | ID requested | |
1 | 2018-09-24 06:41:15 | announced | |
⏵ 2 | 2018-11-13 06:00:44 | announced | Updated publication reference for PubMed record(s): 30410018. |
Publication List
Roth R, Chiapello M, Montero H, Gehrig P, Grossmann J, O'Holleran K, Hartken D, Walters F, Yang SY, Hillmer S, Schumacher K, Bowden S, Craze M, Wallington EJ, Miyao A, Sawers R, Martinoia E, Paszkowski U, A rice Serine/Threonine receptor-like kinase regulates arbuscular mycorrhizal symbiosis at the peri-arbuscular membrane. Nat Commun, 9(1):4677(2018) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: proteomics AM fungi Maize plasma membrabe |
Contact List
Uta Paszkowski |
contact affiliation | University of Cambridge |
contact email | up220@cam.ac.uk |
lab head | |
Marco Chiapello |
contact affiliation | Università degli Studi di Torino |
contact email | chiapello.m@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD002575
- Label: PRIDE project
- Name: Zea mays AM fungi interaction