PXD002533 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Comprehensive Metaproteomic Analyses of Urine |
Description | We profiled both fractions of the urinary proteome for 33 human subjects with varied pathologies such as urinary tract infection (UTI), urogenital injury and commensal bacteria colonization. Using a LC-MS/MS based metaproteomic approach, we identified 5,327 non-redundant human proteins, 2,638 and 4,379 of which were associated with soluble urine (SU) and urinary pellet (UP) fractions, respectively, and approximately 1,206 non-redundant protein orthology groups derived from pathogens and commensal organisms of the urogenital tract |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:03:35.524.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Yanbao Yu |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue; deamidated residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2015-07-13 08:26:28 | ID requested | |
1 | 2018-05-24 09:01:53 | announced | |
⏵ 2 | 2024-10-22 04:03:38 | announced | 2024-10-22: Updated project metadata. |
Publication List
Yu Y, Sikorski P, Smith M, Bowman-Gholston C, Cacciabeve N, Nelson KE, Pieper R, Comprehensive Metaproteomic Analyses of Urine in the Presence and Absence of Neutrophil-Associated Inflammation in the Urinary Tract. Theranostics, 7(2):238-252(2017) [pubmed] |
10.7150/thno.16086; |
Keyword List
curator keyword: Biological, Biomedical |
submitter keyword: metaproteomics, urine, clinicao proteomics |
Contact List
Yanbao Yu |
contact affiliation | J. Craig Venter Institute |
contact email | yayu@jcvi.org |
lab head | |
Yanbao Yu |
contact affiliation | University of Delaware |
contact email | yayu@jcvi.org |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/05/PXD002533 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD002533
- Label: PRIDE project
- Name: Comprehensive Metaproteomic Analyses of Urine