PXD002442

PXD002442 is an original dataset announced via ProteomeXchange.

Title	Serum glycoprotein biomarker discovery and qualification pipeline reveals novel diagnostic biomarkers for esophageal adenocarcinoma
Description	The aim of this project is to identify circulatory diagnostic glycoprotein biomarkers for Barrett's esophagus (BE) and esophageal adenocarcinoma (EAC). Serum samples from healthy, BE and EAC patients were screened using LeMBA-LC-MS/MS-GlycoSelector pipeline as described in the manuscript.
HostingRepository	PRIDE
AnnounceDate	2015-09-25
AnnouncementXML	Submission_2015-10-02_03:09:17.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Alok Shah
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	6520 Quadrupole Time-of-Flight LC/MS

Revision	Datetime	Status	ChangeLog Entry
0	2015-06-29 02:39:41	ID requested
1	2015-09-25 06:38:07	announced
⏵ 2	2015-10-02 03:09:18	announced	Updated publication reference for PubMed record(s): 26404905.

Shah AK, Cao KA, Choi E, Chen D, Gautier B, Nancarrow D, Whiteman DC, Saunders NA, Barbour AP, Joshi V, Hill MM, Serum Glycoprotein Biomarker Discovery and Qualification Pipeline Reveals Novel Diagnostic Biomarker Candidates for Esophageal Adenocarcinoma. Mol Cell Proteomics, 14(11):3023-39(2015) [pubmed]

curator keyword: Biomedical

submitter keyword: Biomarker, Glycoprotein, Barrett's esophagus (BE), Esophageal adenocarcinoma (EAC), Lectin

Dr. Michelle M. Hill
contact affiliation	UQ Diamantina Institute
contact email	m.hill2@uq.edu.au
lab head
Alok Shah
contact affiliation	UQ Diamantina Institute
contact email	a.shah1@uq.edu.au
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/09/PXD002442

PRIDE project URI

• PRIDE
  1. PXD002442
     1. Label: PRIDE project
     2. Name: Serum glycoprotein biomarker discovery and qualification pipeline reveals novel diagnostic biomarkers for esophageal adenocarcinoma