PXD002439

PXD002439 is an original dataset announced via ProteomeXchange.

Title	HLA-DR peptides from human BAL and EBV-transformed B cells
Description	Optimization of the protocols for isolation HLA-DR (MHCII) peptides from human BAL.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:06:04.287.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Jimmy Ytterberg
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	Deamidated; Oxidation; Gln->pyro-Glu
Instrument	LTQ Orbitrap Velos; Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2015-06-29 02:19:23	ID requested
1	2016-08-08 12:54:21	announced
2	2016-10-27 04:00:45	announced	Updated project metadata.
⏵ 3	2024-10-22 04:06:06	announced	2024-10-22: Updated project metadata.

Heyder T, Kohler M, Tarasova NK, Haag S, Rutishauser D, Rivera NV, Sandin C, Mia S, Malmstr, ö, m V, Wheelock Å M, Wahlstr, ö, m J, Holmdahl R, Eklund A, Zubarev RA, Grunewald J, Ytterberg AJ, Approach for Identifying Human Leukocyte Antigen (HLA)-DR Bound Peptides from Scarce Clinical Samples. Mol Cell Proteomics, 15(9):3017-29(2016) [pubmed]

ProteomeXchange project tag: Human Immuno-Peptidome Project (HUPO-HIPP), Biology/Disease-Driven Human Proteome Project (B/D-HPP), Human Proteome Project

curator keyword: Technical, Biomedical

submitter keyword: BAL, Sarcoidosis,HLA-DR peptides

Roman A. Zubarev
contact affiliation	Division of Chemistry I, Department of Medical Biochemistry & Biophysics Karolinska Institutet Stockholm, Sweden
contact email	Roman.Zubarev@ki.se
lab head
Jimmy Ytterberg
contact affiliation	Department of Medicine, Solna, Karolinska Institutet, Stockholm, Sweden
contact email	jimmy.ytterberg@sobi.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/08/PXD002439

PRIDE project URI

• PRIDE
  1. PXD002439
     1. Label: PRIDE project
     2. Name: HLA-DR peptides from human BAL and EBV-transformed B cells