PXD002316

PXD002316 is an original dataset announced via ProteomeXchange.

Title	Ocean acidification and warming impact proteome of early Crassostrea gigas larvae
Description	Increasing atmospheric CO2 raises sea surface temperatures and results in ocean acidification, which will impact upon calcifying marine organisms, such as the commercially and ecologically important Pacific oyster (Crassostrea gigas). Larval stages of development are particularly sensitive to such stressors and may represent population bottlenecks. A two-dimensional electrophoresis (2-DE) proteomic approach was used to investigate the response of 40 hour C. gigas larvae to ocean acidification and warming, and to relate protein expression to phenotypic variation in size and calcification. Larvae were reared at two pHs (8.1 and 7.9) and two temperatures (20°C and 22°C), and comparisons carried out between the four possible treatment combinations. In total 22 differentially expressed spots, corresponding to 18 proteins, were identified by nano-liquid chromatography tandem mass spectrometry. These proteins had roles in metabolism, biomineralisation, intra- and extra-cellular matrix formation and as molecular chaperones. Thirteen of these spots responded to acidification, of which 11 showed reduced expression during acidification. Declines in ATP synthase, arginine kinase and other metabolic proteins suggest metabolic depression occurred during acidification and reduced protein synthesis. In contrast, 6 of 7 proteins that were differentially expressed during warming showed increased expression. Among these were molecular chaperones including protein disulphide isomerase (PDI) and Grp78. Concurrent acidification and warming appeared to mitigate some proteomic changes and negative phenotypic effects observed in acidification at 20°C; however, differential expression of nine proteins and other temperature-independent effects on calcification phenotypes suggest that larval responses to multiple stressors will be complex.
HostingRepository	PRIDE
AnnounceDate	2022-03-01
AnnouncementXML	Submission_2022-03-01_03:22:55.314.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD002316
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Melanie Lagarrigue
SpeciesList	scientific name: Crassostrea gigas (Pacific oyster) (Crassostrea angulata); NCBI TaxID: 29159;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2015-06-08 00:42:38	ID requested
⏵ 1	2022-03-01 03:22:56	announced

Harney E, Artigaud S, Le Souchu P, Miner P, Corporeau C, Essid H, Pichereau V, Nunes FLD, Non-additive effects of ocean acidification in combination with warming on the larval proteome of the Pacific oyster, Crassostrea gigas. J Proteomics, 135():151-161(2016) [pubmed]

curator keyword: Biological

submitter keyword: Crassostrea gigas, ocean acidification, larval development, ATP-synthase, biomineralisation

Charles Pineau
contact affiliation	Protim, Inserm U1085, Irset Campus de Beaulieu 35042 Rennes Cedex, France
contact email	charles.pineau@inserm.fr
lab head
Melanie Lagarrigue
contact affiliation	Life Sciences
contact email	melanie.lagarrigue@univ-rennes1.fr
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD002316
     1. Label: PRIDE project
     2. Name: Ocean acidification and warming impact proteome of early Crassostrea gigas larvae