PXD002126

PXD002126 is an original dataset announced via ProteomeXchange.

Title	Arabidopsis col and rglg iron deficiency response
Description	To dissect the mechanisms that control and mediate cellular iron homeostasis, we conducted quantitative high-resolution iTRAQ proteomics and microarray-based transcriptomic profiling of iron-deficient Arabidopsis thaliana plants. Proteomic and transcriptomic profiling of Arabidopsis Col and RING DOMAIN LIGASE1 (RGLG1) and RING DOMAIN LIGASE2 (RGLG2) double mutation in response to iron deficiency were conducted. This integrative analysis provides a detailed catalog of post-transcriptionally regulated proteins and allows the concept of a chiefly transcriptionally regulated iron deficiency response to be revisited.
HostingRepository	PRIDE
AnnounceDate	2015-08-11
AnnouncementXML	Submission_2015-08-10_16:31:11.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	I-Chun Pan
SpeciesList	scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702;
ModificationList	iodoacetamide derivatized residue; iTRAQ4plex-116 reporter+balance reagent acylated residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2015-04-30 01:26:18	ID requested
⏵ 1	2015-08-10 16:31:12	announced

Pan IC, Tsai HH, Cheng YT, Wen TN, Buckhout TJ, Schmidt W, Post-Transcriptional Coordination of the Arabidopsis Iron Deficiency Response is Partially Dependent on the E3 Ligases RING DOMAIN LIGASE1 (RGLG1) and RING DOMAIN LIGASE2 (RGLG2). Mol Cell Proteomics, 14(10):2733-52(2015) [pubmed]

curator keyword: Biological

submitter keyword: proteomics, iron deficiency, post-transcriptional regulation, systems biology

Wolfgang Schmidt
contact affiliation	Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan
contact email	wosh@gate.sinica.edu.tw
lab head
I-Chun Pan
contact affiliation	Academia Sinica, Taiwan
contact email	claire23@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/08/PXD002126

PRIDE project URI

• PRIDE
  1. PXD002126
     1. Label: PRIDE project
     2. Name: Arabidopsis col and rglg iron deficiency response