PXD002124

PXD002124 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Zebrafish Deyolking Survey
Description	Deyolking, the removal of the most abundant protein from the zebrafish (Danio rerio) embryo, is a common technique for in-depth exploration of proteome-level changes in vivo due to various environmental stressors or pharmacological impacts during embryonic stage of development. However, the effect of this procedure on the remaining proteome has not been fully studied. Here, we report a label-free shotgun proteomics survey on proteome coverage and biological processes that are enriched and depleted as a result of deyolking.
HostingRepository	PRIDE
AnnounceDate	2015-10-14
AnnouncementXML	Submission_2015-10-14_05:15:46.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Laszlo Prokai
SpeciesList	scientific name: Danio rerio (Zebrafish) (Brachydanio rerio); NCBI TaxID: 7955;
ModificationList	deamidated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Velos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2015-04-30 00:48:50	ID requested
⏵ 1	2015-10-14 05:15:47	announced

Publication List

Rahlouni F, Szarka S, Shulaev V, Prokai L, A Survey of the Impact of Deyolking on Biological Processes Covered by Shotgun Proteomic Analyses of Zebrafish Embryos. Zebrafish, 12(6):398-407(2015) [pubmed]

Rahlouni F, Szarka S, Shulaev V, Prokai L, A Survey of the Impact of Deyolking on Biological Processes Covered by Shotgun Proteomic Analyses of Zebrafish Embryos. Zebrafish, 12(6):398-407(2015) [pubmed]

Keyword List

curator keyword: Biological
submitter keyword: Zebrafish, Deyolking, Label-free Proteomics, Bioinformatics

curator keyword: Biological

submitter keyword: Zebrafish, Deyolking, Label-free Proteomics, Bioinformatics

Contact List

Laszlo Prokai
contact affiliation	Department of Pharmacology and Neuroscience
contact email	Laszlo.Prokai@unthsc.edu
lab head
Laszlo Prokai
contact affiliation	Department of Pharmacology and Neuroscience
contact email	advancedms@unthsc.edu
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/10/PXD002124
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/10/PXD002124

PRIDE project URI

Repository Record List

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