PXD002070

PXD002070 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Comprehensive protein interactome analysis of a key RNA helicase: the detection of novel stress granule proteins
Description	We conducted an unbiased large-scale study to map the protein-protein interactome of DDX6 using immunoprecipitation and mass spectrometry.
HostingRepository	PRIDE
AnnounceDate	2019-12-11
AnnouncementXML	Submission_2019-12-11_05:29:47.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Nerea Cuevas Polo
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	LTQ Orbitrap Velos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2015-04-15 01:29:31	ID requested
1	2015-07-27 04:02:21	announced
2	2018-06-05 00:30:47	announced	Updated project metadata.
3	2018-06-11 07:55:11	announced	Updated project metadata.
4	2019-02-13 06:24:46	announced	Updated project metadata.
5	2019-07-23 00:30:35	announced	Updated project metadata.
⏵ 6	2019-12-11 05:29:49	announced	2019-12-11: Updated project metadata.

Publication List

Bish R, Cuevas-Polo N, Cheng Z, Hambardzumyan D, Munschauer M, Landthaler M, Vogel C, Comprehensive Protein Interactome Analysis of a Key RNA Helicase: Detection of Novel Stress Granule Proteins. Biomolecules, 5(3):1441-66(2015) [pubmed]

Bish R, Cuevas-Polo N, Cheng Z, Hambardzumyan D, Munschauer M, Landthaler M, Vogel C, Comprehensive Protein Interactome Analysis of a Key RNA Helicase: Detection of Novel Stress Granule Proteins. Biomolecules, 5(3):1441-66(2015) [pubmed]

Keyword List

curator keyword: Biological
submitter keyword: DDX6, RNA, helicase, post-transcriptional regulation, mass spectrometry, sumoylation, SUMO, NUFIP2, GRAN1, GRAN2, FAM195A, FAM195B, stress granules, P bodies, GW bodies, processing bodies, mRNA decay, translation regulation, splicing, decapping

curator keyword: Biological

submitter keyword: DDX6, RNA, helicase, post-transcriptional regulation, mass spectrometry, sumoylation, SUMO, NUFIP2, GRAN1, GRAN2, FAM195A, FAM195B, stress granules, P bodies, GW bodies, processing bodies, mRNA decay, translation regulation, splicing, decapping

Contact List

Christine Vogel
contact affiliation	New York University, Center for Genomics and Systems Biology, New York NY USA.
contact email	cvogel@nyu.edu
lab head
Nerea Cuevas Polo
contact affiliation	New York University
contact email	nerea.cuevaspolo@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/07/PXD002070
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/07/PXD002070

PRIDE project URI

Repository Record List

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