PXD002049 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | CPTAC proteomic analysis of TCGA colon and rectal carcinomas using standard and customized databases, part 9 |
Description | The goal of the CPTAC, TCGA Cancer Proteome Study of Colorectal Tissue is to analyze the proteomes of TCGA tumor samples that have been comprehensively characterized by molecular methods. Ninety-five TCGA tumor samples were used in this study. |
HostingRepository | PRIDE |
AnnounceDate | 2015-06-13 |
AnnouncementXML | Submission_2015-07-02_01:07:43.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD002049 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Robbert Slebos |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | Oxidation; Gln->pyro-Glu; Glu->pyro-Glu; Acetyl; Carbamidomethyl |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2015-04-13 00:18:09 | ID requested | |
1 | 2015-06-12 22:13:49 | announced | |
⏵ 2 | 2015-07-02 01:07:44 | announced | Updated publication reference for PubMed record(s): 26110064. |
Publication List
Slebos RJ, Wang X, Wang X, Zhang B, Tabb DL, Liebler DC, Proteomic analysis of colon and rectal carcinoma using standard and customized databases. Sci Data, 2():150022(2015) [pubmed] |
Keyword List
ProteomeXchange project tag: CPTAC Consortium |
curator keyword: Biomedical, Highlighted |
submitter keyword: CPTAC CPTAC-TCGA_Colorectal_Cancer CPTAC-VU |
Contact List
Daniel C. Liebler, Ph.D. |
contact affiliation | Vanderbilt University |
contact email | daniel.liebler@Vanderbilt.Edu |
lab head | |
Robbert Slebos |
contact affiliation | Vanderbilt University |
contact email | r.slebos@vanderbilt.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/06/PXD002049 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD002049
- Label: PRIDE project
- Name: CPTAC proteomic analysis of TCGA colon and rectal carcinomas using standard and customized databases, part 9