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PXD002028

PXD002028 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleTissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multi-algorithm Pipeline
DescriptionPlutella xylostella is the major cosmopolitan pest of brassica and other crucifer crops, the larval midgut of which is a dynamic organ that interfaces with a divers earray of physiological and toxicological processes. The draft sequence of the P.xylostella genome was recently released, but its annotation remains challenging because of the low coverage of this branch of life.Peptide sequencing by computational assignment of tandem mass spectra to a database of putative protein sequences provides an independent approach to confirm or refute protein prediction, which has been termed proteogenomics. In this study we carried out an in-depth proteogenomic analysis using shotgun HPLC-ESI-MS/MS approach with a multi-algorithme pipeline to complement genome annotation in the P.xylostella larval midgut.
HostingRepositoryPRIDE
AnnounceDate2015-10-12
AnnouncementXMLSubmission_2015-10-12_05:20:55.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterXun Zhu
SpeciesList scientific name: Plutella xylostella (Diamondback moth) (Plutella maculipennis); NCBI TaxID: 51655;
ModificationListdeamidated residue; monohydroxylated residue; iodoacetamide derivatized residue
InstrumentLTQ Orbitrap Velos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02015-04-08 01:43:09ID requested
12015-10-12 05:20:56announced
Publication List
Dataset with its publication pending
Keyword List
curator keyword: Biological
submitter keyword: Plutella xylostella,Proteogenomic,MSMS,Proteome
Contact List
Xun Zhu
contact affiliationDepartment of Entomology,Institute of Vegetables and Flowers,Chinese Academy of Agriculture Sciences,Beijing,100081,China
contact emailzhuxun99@gmail.com
lab head
Xun Zhu
contact affiliationDepartment of Entomology, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
contact emailzhuxun99@gmail.com
dataset submitter
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Dataset FTP location
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PRIDE project URI
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