PXD002028 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Tissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multi-algorithm Pipeline |
Description | Plutella xylostella is the major cosmopolitan pest of brassica and other crucifer crops, the larval midgut of which is a dynamic organ that interfaces with a divers earray of physiological and toxicological processes. The draft sequence of the P.xylostella genome was recently released, but its annotation remains challenging because of the low coverage of this branch of life.Peptide sequencing by computational assignment of tandem mass spectra to a database of putative protein sequences provides an independent approach to confirm or refute protein prediction, which has been termed proteogenomics. In this study we carried out an in-depth proteogenomic analysis using shotgun HPLC-ESI-MS/MS approach with a multi-algorithme pipeline to complement genome annotation in the P.xylostella larval midgut. |
HostingRepository | PRIDE |
AnnounceDate | 2015-10-12 |
AnnouncementXML | Submission_2015-10-12_05:20:55.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Xun Zhu |
SpeciesList | scientific name: Plutella xylostella (Diamondback moth) (Plutella maculipennis); NCBI TaxID: 51655; |
ModificationList | deamidated residue; monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2015-04-08 01:43:09 | ID requested | |
⏵ 1 | 2015-10-12 05:20:56 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
curator keyword: Biological |
submitter keyword: Plutella xylostella,Proteogenomic,MSMS,Proteome |
Contact List
Xun Zhu |
contact affiliation | Department of Entomology,Institute of Vegetables and Flowers,Chinese Academy of Agriculture Sciences,Beijing,100081,China |
contact email | zhuxun99@gmail.com |
lab head | |
Xun Zhu |
contact affiliation | Department of Entomology, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China |
contact email | zhuxun99@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD002028
- Label: PRIDE project
- Name: Tissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multi-algorithm Pipeline