PXD001945

PXD001945 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	CPTAC proteomic analysis of TCGA colon and rectal carcinomas using standard and customized databases
Description	The goal of the CPTAC, TCGA Cancer Proteome Study of Colorectal Tissue is to analyze the proteomes of TCGA tumor samples that have been comprehensively characterized by molecular methods. Ninety-five TCGA tumor samples were used in this study.
HostingRepository	PRIDE
AnnounceDate	2022-03-01
AnnouncementXML	Submission_2022-03-01_08:46:21.486.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Robbert Slebos
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	LTQ Orbitrap Velos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2015-03-17 04:14:09	ID requested
⏵ 1	2022-03-01 08:46:22	announced

Publication List

Slebos RJ, Wang X, Wang X, Zhang B, Tabb DL, Liebler DC, Proteomic analysis of colon and rectal carcinoma using standard and customized databases. Sci Data, 2():150022(2015) [pubmed]

Slebos RJ, Wang X, Wang X, Zhang B, Tabb DL, Liebler DC, Proteomic analysis of colon and rectal carcinoma using standard and customized databases. Sci Data, 2():150022(2015) [pubmed]

Keyword List

ProteomeXchange project tag: CPTAC Consortium
curator keyword: Biomedical
submitter keyword: CPTAC CPTAC-TCGA_Colorectal_Cancer CPTAC-VU

ProteomeXchange project tag: CPTAC Consortium

curator keyword: Biomedical

submitter keyword: CPTAC CPTAC-TCGA_Colorectal_Cancer CPTAC-VU

Contact List

Daniel C. Liebler, Ph.D.
contact affiliation	Vanderbilt University
contact email	daniel.liebler@Vanderbilt.Edu
lab head
Robbert Slebos
contact affiliation	Vanderbilt University
contact email	r.slebos@vanderbilt.edu
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/03/PXD001945
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/03/PXD001945

PRIDE project URI

Repository Record List

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