PXD001933

PXD001933 is an original dataset announced via ProteomeXchange.

Title	The value of subcellular fractionation for protein identification in a B-cell line (Ramos)
Description	Integrated in the Chromosomic-centric Human Proteome Project (C-HPP), a lymphocytic B-cell line (Ramos) was selected as a model of B-cells. We performed a subfractionation strategy (in triplicate) for the extraction of proteins from 4 different fractions (cytoplasm, CYT; organella, ORG; membrane, MB; nucleus, NUC).
HostingRepository	PRIDE
AnnounceDate	2015-08-04
AnnouncementXML	Submission_2015-08-04_08:38:30.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD001933
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Paula Díez
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	Oxidation; Acetyl; Carbamidomethyl
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2015-03-13 09:01:30	ID requested
⏵ 1	2015-08-04 08:38:31	announced

D, í, ez P, Droste C, D, é, gano RM, Gonz, á, lez-Mu, ñ, oz M, Ibarrola N, P, é, rez-Andr, é, s M, Garin-Muga A, Segura V, Marko-Varga G, LaBaer J, Orfao A, Corrales FJ, De Las Rivas J, Fuentes M, Integration of Proteomics and Transcriptomics Data Sets for the Analysis of a Lymphoma B-Cell Line in the Context of the Chromosome-Centric Human Proteome Project. J Proteome Res, 14(9):3530-40(2015) [pubmed]

ProteomeXchange project tag: Chromosome-centric Human Proteome Project (C-HPP), Human Proteome Project

curator keyword: Biological

submitter keyword: B-cell, Ramos, Orbitrap, human, cytoplasm, nucleus, organella, membrane

Manuel Fuentes
contact affiliation	Department of Medicine and General Cytometry Service-Nucleus, Cancer Research Centre (CSIC/USAL/IBSAL). Avda. Universidad de Coimbra, S/N, 37007 Salamanca, Spain. Phone: +34 923294811 Fax: +34 923294743
contact email	mfuentes@usal.es
lab head
Paula Díez
contact affiliation	Cancer Research Institute-USAL
contact email	pauladg@usal.es
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/08/PXD001933

PRIDE project URI

• PRIDE
  1. PXD001933
     1. Label: PRIDE project
     2. Name: The value of subcellular fractionation for protein identification in a B-cell line (Ramos)