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PXD001907

PXD001907 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleSuperQuant: a Data Processing Approach to Increase Quantitative Proteome Coverage
DescriptionSuperQuant is a quantitative proteomics data processing workflow that utilizes fragment ion complementarity to identify multiple co-isolated peptides in tandem mass spectra. Parent ion and label-free quantification method are supported. The performance of the developed approach was tested using dimethyl labeled HeLa lysate sample having artificially created ratio between channels (10(heavy):4(medium):1(light)). Developed software is implemented as a processing node to Thermo Proteome Discoverer 2.x and freely available for the community at https://github.com/caetera/SuperQuantNode.
HostingRepositoryPRIDE
AnnounceDate2015-05-26
AnnouncementXMLSubmission_2015-05-26_08:41:19.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterVladimir Gorshkov
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListiodoacetamide derivatized residue; 2x(13)C: 6x(2)H labeled dimethylated L-arginine; dimethylated residue; 4x(2)H labeled dimethylated residue
InstrumentOrbitrap Fusion
Dataset History
RevisionDatetimeStatusChangeLog Entry
02015-03-12 02:31:19ID requested
12015-05-26 08:41:20announced
Publication List
Gorshkov V, Verano-Braga T, Kjeldsen F, SuperQuant: A Data Processing Approach to Increase Quantitative Proteome Coverage. Anal Chem, 87(12):6319-27(2015) [pubmed]
Keyword List
curator keyword: Technical
submitter keyword: LC-MSMS, HeLa, complementary ions, data processing, post-aquisition
Contact List
Frank Kjeldsen
contact affiliationAssociate professor, Department of Biochemistry and Molecular Biology, University of Southern Denmark
contact emailfrankk@bmb.sdu.dk
lab head
Vladimir Gorshkov
contact affiliationUniversity of Southern Denmark
contact emailvgor@bmb.sdu.dk
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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