PXD001907 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | SuperQuant: a Data Processing Approach to Increase Quantitative Proteome Coverage |
Description | SuperQuant is a quantitative proteomics data processing workflow that utilizes fragment ion complementarity to identify multiple co-isolated peptides in tandem mass spectra. Parent ion and label-free quantification method are supported. The performance of the developed approach was tested using dimethyl labeled HeLa lysate sample having artificially created ratio between channels (10(heavy):4(medium):1(light)). Developed software is implemented as a processing node to Thermo Proteome Discoverer 2.x and freely available for the community at https://github.com/caetera/SuperQuantNode. |
HostingRepository | PRIDE |
AnnounceDate | 2015-05-26 |
AnnouncementXML | Submission_2015-05-26_08:41:19.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Vladimir Gorshkov |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | iodoacetamide derivatized residue; 2x(13)C: 6x(2)H labeled dimethylated L-arginine; dimethylated residue; 4x(2)H labeled dimethylated residue |
Instrument | Orbitrap Fusion |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2015-03-12 02:31:19 | ID requested | |
⏵ 1 | 2015-05-26 08:41:20 | announced | |
Publication List
Gorshkov V, Verano-Braga T, Kjeldsen F, SuperQuant: A Data Processing Approach to Increase Quantitative Proteome Coverage. Anal Chem, 87(12):6319-27(2015) [pubmed] |
Keyword List
curator keyword: Technical |
submitter keyword: LC-MSMS, HeLa, complementary ions, data processing, post-aquisition |
Contact List
Frank Kjeldsen |
contact affiliation | Associate professor, Department of Biochemistry and Molecular Biology, University of Southern Denmark |
contact email | frankk@bmb.sdu.dk |
lab head | |
Vladimir Gorshkov |
contact affiliation | University of Southern Denmark |
contact email | vgor@bmb.sdu.dk |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/05/PXD001907 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD001907
- Label: PRIDE project
- Name: SuperQuant: a Data Processing Approach to Increase Quantitative Proteome Coverage