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PXD001860

DataSet Summary

  • HostingRepository: MassIVE
  • AnnounceDate: 2015-03-02
  • AnnouncementXML: Submission_2015-03-02_15:03:14.xml
  • DigitalObjectIdentifier:
  • ReviewLevel: Non peer-reviewed dataset
  • DatasetOrigin: Original data
  • RepositorySupport: Supported dataset by repository
  • PrimarySubmitter: Sam Payne
  • Title: PNNL Biodiversity Library - Microbial Section
  • Description: A collection of MS/MS data 112 microbial species. #BiodiversityLibrary
  • SpeciesList: scientific name: Acidiphilium cryptum JF-5; NCBI TaxID: 349163; scientific name: Actinosynnema mirum DSM 43827; NCBI TaxID: 446462; scientific name: Anabaena variabilis; NCBI TaxID: 1172; scientific name: Anaeromyxobacter dehalogenans; NCBI TaxID: 161493; scientific name: Anaplasma phagocytophilum; NCBI TaxID: 948; scientific name: Arthrobacter sp. FB24; NCBI TaxID: 290399; scientific name: Bacillus anthracis str. Ames; NCBI TaxID: 198094; scientific name: Bacillus anthracis str. Sterne; NCBI TaxID: 260799; scientific name: Bacillus subtilis subsp. subtilis str. 168; NCBI TaxID: 224308; scientific name: Bartonella henselae str. Houston-1; NCBI TaxID: 283166; scientific name: Borrelia burgdorferi B31; NCBI TaxID: 224326; scientific name: Brachybacterium faecium DSM 4810; NCBI TaxID: 446465; scientific name: Burkholderia mallei; NCBI TaxID: 13373; scientific name: Candidatus Chloracidobacterium thermophilum; NCBI TaxID: 458033; scientific name: Caulobacter crescentus CB15; NCBI TaxID: 190650; scientific name: Cellulomonas flavigena DSM 20109; NCBI TaxID: 446466; scientific name: Cenarchaeum symbiosum; NCBI TaxID: 46770; scientific name: Chlorobaculum tepidum; NCBI TaxID: 1097; scientific name: Chloroflexus aurantiacus; NCBI TaxID: 1108; scientific name: Clostridium thermocellum; NCBI TaxID: 1515; scientific name: Cryptobacterium curtum DSM 15641; NCBI TaxID: 469378; scientific name: Synechocystis sp. PCC 6803; NCBI TaxID: 1148; scientific name: Cyanothece sp. ATCC 51142; NCBI TaxID: 43989; scientific name: Cyanothece sp. ATCC 51472; NCBI TaxID: 860575; scientific name: Cyanothece sp. PCC 7424; NCBI TaxID: 65393; scientific name: Cyanothece sp. PCC 7425; NCBI TaxID: 395961; scientific name: Cyanothece sp. PCC 7822; NCBI TaxID: 497965; scientific name: Cyanothece sp. PCC 8801; NCBI TaxID: 41431; scientific name: Cyanothece sp. PCC 8802; NCBI TaxID: 395962; scientific name: Dehalococcoides ethenogenes 195; NCBI TaxID: 243164; scientific name: Deinococcus radiodurans R1; NCBI TaxID: 243230; scientific name: delta proteobacterium NaphS2; NCBI TaxID: 88274; scientific name: Desulfovibrio desulfuricans; NCBI TaxID: 876; scientific name: Desulfovibrio desulfuricans ND132; NCBI TaxID: 641491; scientific name: Desulfovibrio vulgaris str. Hildenborough; NCBI TaxID: 882; scientific name: Dethiosulfovibrio peptidovorans DSM 11002; NCBI TaxID: 469381; scientific name: Ehrlichia chaffeensis; NCBI TaxID: 945; scientific name: Enterobacter cloacae SCF1; NCBI TaxID: 701347; scientific name: Escherichia coli BL21; NCBI TaxID: 511693; scientific name: Escherichia coli str. K-12 substr. MG1655; NCBI TaxID: 511145; scientific name: escherichia coli rk4353; scientific name: Fibrobacter succinogenes subsp. succinogenes S85; NCBI TaxID: 59374; scientific name: Geobacter bemidjiensis Bem; NCBI TaxID: 404380; scientific name: Geobacter metallireducens GS-15; NCBI TaxID: 269799; scientific name: Geobacter sulfurreducens PCA; NCBI TaxID: 243231; scientific name: Geobacter uraniireducens; NCBI TaxID: 351604; scientific name: Haloferax volcanii; NCBI TaxID: 2246; scientific name: Halogeometricum borinquense DSM 11551; NCBI TaxID: 469382; scientific name: Halorhabdus utahensis DSM 12940; NCBI TaxID: 519442; scientific name: Heliobacterium modesticaldum; NCBI TaxID: 35701; scientific name: Kineococcus radiotolerans SRS30216; NCBI TaxID: 266940; scientific name: Kosmotoga olearia TBF 19.5.1; NCBI TaxID: 521045; scientific name: Methanosarcina barkeri; NCBI TaxID: 2208; scientific name: Methanospirillum hungatei JF-1; NCBI TaxID: 323259; scientific name: Methylophilales bacterium HTCC2181; NCBI TaxID: 383631; scientific name: Mycobacterium tuberculosis H37Rv; NCBI TaxID: 83332; scientific name: Nakamurella multipartita DSM 44233; NCBI TaxID: 479431; scientific name: Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111; NCBI TaxID: 446468; scientific name: Novosphingobium aromaticivorans; NCBI TaxID: 48935; scientific name: Diplosphaera colitermitum TAV2; NCBI TaxID: 278957; scientific name: Candidatus Pelagibacter ubique HTCC1062; NCBI TaxID: 335992; scientific name: Pelobacter carbinolicus DSM 2380; NCBI TaxID: 338963; scientific name: Prochlorococcus marinus subsp. pastoris str. CCMP1986; NCBI TaxID: 59919; scientific name: Pseudomonas aeruginosa PAO1; NCBI TaxID: 208964; scientific name: Pseudomonas fluorescens Pf0-1; NCBI TaxID: 205922; scientific name: Pseudonocardia sp.; NCBI TaxID: 60912; scientific name: Ralstonia pickettii; NCBI TaxID: 329; scientific name: Rhodobacter capsulatus SB 1003; NCBI TaxID: 272942; scientific name: Rhodobacter sphaeroides 2.4.1; NCBI TaxID: 272943; scientific name: Rhodopseudomonas palustris; NCBI TaxID: 1076; scientific name: Roseiflexus castenholzii; NCBI TaxID: 120962; scientific name: Saccharomonospora viridis DSM 43017; NCBI TaxID: 471857; scientific name: Salmonella enterica subsp. enterica serovar Typhi str. Ty2; NCBI TaxID: 209261; scientific name: Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S; NCBI TaxID: 588858; scientific name: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; NCBI TaxID: 99287; scientific name: Sanguibacter keddieii DSM 10542; NCBI TaxID: 446469; scientific name: Shewanella amazonensis SB2B; NCBI TaxID: 326297; scientific name: Shewanella baltica OS155; NCBI TaxID: 325240; scientific name: Shewanella baltica OS185; NCBI TaxID: 402882; scientific name: Shewanella baltica OS195; NCBI TaxID: 399599; scientific name: Shewanella baltica OS223; NCBI TaxID: 407976; scientific name: Shewanella denitrificans OS217; NCBI TaxID: 318161; scientific name: Shewanella frigidimarina NCIMB 400; NCBI TaxID: 318167; scientific name: Shewanella loihica PV-4; NCBI TaxID: 323850; scientific name: Shewanella oneidensis MR-1; NCBI TaxID: 211586; scientific name: Shewanella putrefaciens 200; NCBI TaxID: 399804; scientific name: Shewanella putrefaciens CN-32; NCBI TaxID: 319224; scientific name: Shewanella sp. W3-18-1; NCBI TaxID: 351745; scientific name: Shewanella sp. ANA-3; NCBI TaxID: 94122; scientific name: Shewanella sp. MR-4; NCBI TaxID: 60480; scientific name: Shewanella sp. MR-7; NCBI TaxID: 60481; scientific name: Sinorhizobium medicae; NCBI TaxID: 110321; scientific name: Sinorhizobium meliloti 1021; NCBI TaxID: 266834; scientific name: Slackia heliotrinireducens DSM 20476; NCBI TaxID: 471855; scientific name: Stackebrandtia nassauensis DSM 44728; NCBI TaxID: 446470; scientific name: Sulfolobus acidocaldarius DSM 639; NCBI TaxID: 330779; scientific name: Synechococcus sp. PCC 7002; NCBI TaxID: 32049; scientific name: Syntrophobacter fumaroxidans; NCBI TaxID: 119484; scientific name: Thermobispora bispora DSM 43833; NCBI TaxID: 469371; scientific name: Thermosynechococcus elongatus BP-1; NCBI TaxID: 197221; scientific name: Thermosynechococcus sp. NK55a; scientific name: Thermotoga maritima; NCBI TaxID: 2336; scientific name: Thiocapsa marina; NCBI TaxID: 244573; scientific name: Opitutaceae bacterium TAV1; NCBI TaxID: 278956; scientific name: Opitutaceae bacterium TAV5; NCBI TaxID: 794903; scientific name: Xylanimonas cellulosilytica DSM 15894; NCBI TaxID: 446471; scientific name: Yersinia enterocolitica; NCBI TaxID: 630; scientific name: Yersinia pestis CO92; NCBI TaxID: 214092; scientific name: Yersinia pestis KIM10+; NCBI TaxID: 187410; scientific name: Yersinia pseudotuberculosis IP 32953; NCBI TaxID: 273123; scientific name: Yersinia pseudotuberculosis PB1/+; NCBI TaxID: 502801;
  • ModificationList: Oxidation
  • Instrument: LTQ; LTQ FT; LTQ Orbitrap; LTQ Orbitrap Velos

Dataset History

VersionDatetimeStatusChangeLog Entry
02015-03-02 14:33:04ID requested
12015-03-02 15:03:15announced

Publication List

  1. Dataset with its publication pending

Keyword List

  1. submitter keyword: Biodiversity Library data from microbes

Contact List

    Sam Payne
    • lab head:
    Sam Payne
    • contact affiliation: UCSD
    • contact email: samuel.payne@pnnl.gov
    • dataset submitter:

Full Dataset Link List

  1. MassIVE dataset URI
  2. Dataset FTP location

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