<<< Full experiment listing

PXD001817

PXD001817 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleUncovering the abilities of Agaricus bisporus to degrade plant biomass throughout its life cycle
DescriptionThe common edible mushroom Agaricus bisporus is a basidiomycete that thrives on decaying plant material in the forests and grasslands of North America and Europe. It is adapted to forest litter and contributes to global carbon recycling, depolymerizing cellulose, hemicellulose and lignin in plant biomass. A. bisporus is also an edible mushroom that is widely cultivated and economically important. However, relatively little is known about how A. bisporus grows in this controlled environment in commercial production facilities and utilizes its substrate. Using transcriptomics and proteomics, we showed that changes in plant biomass degradation by A. bisporus occur throughout its life cycle. Ligninolytic genes were highly expressed during the spawning stage day 16 and had low expression during all the other growth stages which could indicate that lignin is not modified after the spawning stage. Our results also revealed differences in gene expression involved in cellulose and hemicellulose degradation between the first and second flushes. This could partially explain the reduction in the number of mushrooms during the second flush.
HostingRepositoryPRIDE
AnnounceDate2015-08-05
AnnouncementXMLSubmission_2015-08-05_02:30:45.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterHarm Post
SpeciesList scientific name: Agaricus bisporus (White button mushroom); NCBI TaxID: 5341;
ModificationListmonohydroxylated residue
InstrumentQ Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02015-02-16 02:57:13ID requested
12015-08-05 02:30:47announced
Publication List
Patyshakuliyeva A, Post H, Zhou M, Jurak E, Heck AJ, Hild, é, n KS, Kabel MA, M, ä, kel, ä MR, Altelaar MA, de Vries RP, Uncovering the abilities of Agaricus bisporus to degrade plant biomass throughout its life cycle. Environ Microbiol, 17(8):3098-109(2015) [pubmed]
Keyword List
curator keyword: Biological
submitter keyword: Agaricus bisporus, plant biomass, RNA-seq, proteome, compost
Contact List
R. P. de Vries
contact affiliationFungal Physiology, CBS-KNAW Fungal Biodiversity Centre & Fungal Molecular Physiology, Utrecht University, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
contact emailr.devries@cbs.knaw.nl
lab head
Harm Post
contact affiliationBiomolecular Mass Spectrometry and Proteomics Group
contact emailh.post@uu.nl
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/08/PXD001817
PRIDE project URI
Repository Record List
[ + ]