PXD001764

PXD001764 is an original dataset announced via ProteomeXchange.

Title	The dataset to discover ESCC related proteins
Description	To discover ESCC related proteins, we used SWATH to quantify the protein abundance between ESCC and adjacent tissues. Briefly, we pooled 10 ESCCtissues and their corresponding adjacent tissues for SWATH acquisition with three replicates.Three DDA repeats were also acquired with the pooled 10-paired ESCC tissue.The trypsin digested peptide mixture was analyzed by AB SCIEX 5600 (AB SCIEX).The database searching procedure was achieved using ProteinPilot v4.5 (AB Sciex). The database is IPI_homo_sapiens_V3.87.
HostingRepository	PRIDE
AnnounceDate	2015-09-22
AnnouncementXML	Submission_2015-09-22_04:59:10.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Xue Hou
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	TripleTOF 5600

Revision	Datetime	Status	ChangeLog Entry
0	2015-01-29 02:41:50	ID requested
⏵ 1	2015-09-22 04:59:11	announced

Hou G, Lou X, Sun Y, Xu S, Zi J, Wang Q, Zhou B, Han B, Wu L, Zhao X, Lin L, Liu S, Biomarker Discovery and Verification of Esophageal Squamous Cell Carcinoma Using Integration of SWATH/MRM. J Proteome Res, 14(9):3793-803(2015) [pubmed]

curator keyword: Biomedical

submitter keyword: ESCC,tissue,DDA,SWATH

siqi liu
contact affiliation	BGI-Shenzhen,China
contact email	siqiliu@genomics.cn
lab head
Xue Hou
contact affiliation	BGI
contact email	houguixue@genomics.cn
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/09/PXD001764

PRIDE project URI

• PRIDE
  1. PXD001764
     1. Label: PRIDE project
     2. Name: The dataset to discover ESCC related proteins